Publikace

2023

Abramová, V., Leal Alvarado, V., Hill, M., Smejkalová, T., Malý, M.,Valeš, K., Dittert, I., Božíková, P., Kysilov, B., Hrčka Krausová, B., Vyklický, V., Balík, A., Fili, K.,Kořínek, M., Chodounská, H., Kudová, E., Číž, D., Martinovič, J., Černý, J., Bartůněk, P., Vyklický ml., L. (2023) "Effects of Pregnanolone Glutamate and Its Metabolites on GABAA and NMDA Receptors and Zebrafish Behavior" ACS Chemical Neuroscience 14, 10(1870-1883) https://doi.org/10.1021/acschemneuro.3c00131
Agirre, J. , Atanasova, M., Bagdonas, H., Ballard, Ch. B., Basle, A., Beilsten-Edmands, J., Borges, R. J. , Brown, D. G., Burgos-Marmol, J. J., Berrisford, J. M., Bond, P. S., Caballero, I., Catapano, L., Chojnowski, G., Cook, A. G., Cowtan, K. D., Croll, T. I., Debreczeni, J. E., Devenish, N. E., Dodson, E. J., Drevon, T. R., Emsley, P., Evans, G., Evans, P. R., Fando, M., Foadi, J., Fuentes-Montero, L., Garman, E. F., Gerstel, M., Gildea, R. J., Kolenko, P., Malý, M., (2023) "The CCP4 suite: integrative software for macromolecular crystallography Acta Crystallographica Section D-Biological Crystallography 79, s. 449-461 https://doi.org/10.1107/S2059798323003595
Bielcikova, Z., Werner, L., Štursa, J., Černý, V., Křížová, L. , Špaček, J., Hlousek, S., Vočka, M., Bartosova, O., Pesta, M., Kološtová, K., Klezl, P., Bobek, V., Truksa, J., Štemberková-Hubáčková, S., Petruzelka, L., Michálek, P., Neužil, J. (2023) "Mitochondrially targeted tamoxifen as anticancer therapy: case series of patients with renal cell carcinoma treated in a phase I/Ib clinical trial" Therapeutic Advances in Medical Oncology https://doi.org/10.1177/17588359231197957
Bielcikova, Z., Štursa, J., Křížová, L., Dong, L., Špaček, J., Hlousek, S., Vocka, M. , Rohlenová, K., Bartosova, O., Černý, V., Padrta, T., Pesta, M., Michálek, P., Hubáčková, S., Kološtová, K., Pospíšilová, E., Bobek, V.,Klezl, P., Zobalová, R., Endaya, B., Rohlena, J., Petruzelka, L., Werner, L., Neužil, J. (2023) "Mitochondrially targeted tamoxifen in patients with metastatic solid tumours: an open-label, phase I/Ib single-centre trial" ECLINICALMEDICINE https://doi.org/10.1016/j.eclinm.2023.101873
Bohuslavová, R., Fabriciová, V., Lebron-Mora, L., Malfatti, J., Smolík, O., Valihrach, L., Benešová, Š., Žucha, D., Berková, Z., Saudek, F., Evans, S. M., Pavlínková, G.,(2023) "ISL1 controls pancreatic alpha cell fate and beta cell maturation" Cell and Bioscience 13, 1 https://doi.org/10.1186/s13578-023-01003-9
Bohuslavová, R., Fabriciová, V., Smolík, O., Lebron-Mora, L., Abaffy, P., Benešová, Š., Žucha, D., Valihrach, L., Berková, Z., Saudek, F., Pavlínková, G., (2023) "NEUROD1 reinforces endocrine cell fate acquisition in pancreatic development" Nature Communications 4, 1, https://doi.org/10.1038/s41467-023-41306-6
Das, G., Ptáček, J., Havlínová, B., Nedvědová, J., Bařinka, C., Nováková, Z. (2023) "Targeting Prostate Cancer Using Bispecific T-Cell Engagers against Prostate-Specific Membrane Antigen" ACS PHARMACOLOGY & TRANSLATIONAL SCIENCE https://doi.org/ 10.1021/acsptsci.3c00159
Data, K., Marcinkowska, K., Bus, K., Valihrach, L., Pawlak, E., Smieszek, A. (2023) "beta-Lactoglobulin affects the oxidative status and viability of equine endometrial progenitor cells via lncRNA-mRNA-miRNA regulatory associations" Journal of Cellular and Molecular Medicine 27, č. 7 (2023), s. 927-938 https://doi.org/10.1111/jcmm.17694
De Rooij, L. P. M. H., Becker, L. M., Teuwen, L.-A., Boeckx, B., Jansen, S., Feys, S., Verleden, S., Liesenborghs, L., Stalder, A.K., Libbrecht, S., Van Buyten, T., Philips, G., Subramanian, A., Dumas, S. J., Meta, E., Borri, M., Sokol, L., Dendooven, A., Truong, A. C. K., Gunst, J., Van Mol, P., Haslbauer, J. D., Rohlenová, K., Menter, T., Boudewijns, R., Geldhof, V., Vinckier, S. ,Amersfoort, J., Wuyts, W., Van Raemdonck, D.(2023) "The pulmonary vasculature in lethal COVID-19 and idiopathic pulmonary fibrosis at single-cell resolution" Cardiovascular Research, 119, 2 (520-535) https://doi.org/10.1093/cvr/cvac139
Dong, L., Rohlena, J., Zobalová, R., Nahácka, Z., Rodriguez, A., Berridge, M. V. V., Neužil, J. (2023) "Mitochondria on the move: Horizontal mitochondrial transfer in disease and health" Journal of Cell Biology https://doi.org/10.1083/jcb.202211044
Fedorová, V., Pospíšilová, V., Váňová, T., Amruz Černá, K., Abaffy, P., Sedmík, J., Raška, J., Vochyánova, S., Matúšová, Z., Houserová, J., Valihrach, L., Hodný, Z., Bohaciaková, D. (2023) "Glioblastoma and cerebral organoids: development and analysis of an in vitro model for glioblastoma migration" Molecular Oncology 17, 4 (647-663) https://doi.org/10.1002/1878-0261.13389
Feng, J., Neužil, J., Manz, A., Iliescu, C., Neužil, P. (2023) "Microfluidic trends in drug screening and drug delivery TrAC-Trends in Analytical Chemistry" https://doi.org/10.1016/j.trac.2022.116821
Ferenčáková, M., Beňová, A., Raška Jr., I., Abaffy, P., Šindelka, R., Džubanová, M., Pospíšilová, E., Kolostová, K., Čajka, T., Paclík, A., Zikán, V., Tencerová, M., (2023) "Human bone marrow stromal cells: the impact of anticoagulants on stem cell properties" Frontiers in Cell and Developmental Biology https://doi.org/10.3389/fcell.2023.1255823
Filipi, T., Matúšová, Z., Abaffy, P., Vaňátko, O., Turečková, J., Benešová, Š., Kubísková, M., Kirdajová, D., Zahumenský, J., Valihrach, L., Anděrová, M., (2023) "Cortical glia in SOD1(G93A) mice are subtly affected by ALS-like pathology" Scientific Reports https://doi.org/10.1038/s41598-023-33608-y
Genova, M., Grycova, L., Puttrich, V., Magiera, M. M., Lansky, Z., Janke, C., & Braun, M. (2023, Jan 13). Tubulin polyglutamylation differentially regulates microtubule-interacting proteins. EMBO J, e112101. https://doi.org/10.15252/embj.2022112101
Huliciak, M., Biedermanova, L., Berdar, D., Herynek, S., Kolarova, L., Tomala, J., Mikulecky, P., & Schneider, B. (2023, Jan 13). Combined in vitro and cell-based selection display method producing specific binders against IL-9 receptor in high yields. FEBS J. https://doi.org/10.1111/febs.16726
Chaudhari, A. S., Chatterjee, A., Domingos, C. A. O., Andrikopoulos, P. C., Liu, Y., Andersson, I., Schneider, B., Lorenz-Fonfria, V. A., & Fuertes, G. (2023, Feb 10). Genetically encoded non-canonical amino acids reveal asynchronous dark reversion of chromophore, backbone and side-chains in EL222. Protein Sci, e4590. https://doi.org/10.1002/pro.4590
Ilani, T., Reznik, N., Yeshaya, N., Feldman, T., Vilela, P., Lansky, Z., Javitt, G., Shemesh, M., Brenner, O., Elkis, Y., Varsano, N., Jaramillo, A. M., Evans, C. M., & Fass, D. (2023, Jan 16). The disulfide catalyst QSOX1 maintains the colon mucosal barrier by regulating Golgi glycosyltransferases. EMBO J, 42(2), e111869. https://doi.org/10.15252/embj.2022111869
Klimesova, K., Petrzilkova, H., Barinka, C., & Stanek, D. (2023, Jan 15). SART3 associates with a post-splicing complex. J Cell Sci, 136(2). https://doi.org/10.1242/jcs.260380
Liu, Y., Chaudhari, A. S., Chatterjee, A., Andrikopoulos, P. C., Picchiotti, A., Rebarz, M., Kloz, M., Lorenz-Fonfria, V. A., Schneider, B., & Fuertes, G. (2023, Jan 12). Sub-Millisecond Photoinduced Dynamics of Free and EL222-Bound FMN by Stimulated Raman and Visible Absorption Spectroscopies. Biomolecules, 13(1). https://doi.org/10.3390/biom13010161
Mikesova, J., Ondrakova, M., Jelinkova, I., Ptacek, J., Novakova, Z., & Barinka, C. (2023). Determining Potency of Inhibitors Targeting Histone Deacetylase 6 by Quantification of Acetylated Tubulin in Cells. Methods Mol Biol, 2589, 455-466. https://doi.org/10.1007/978-1-0716-2788-4_29
Oh, S., Jo, S., Bajzikova, M., Kim, H. S., Dao, T. T. P., Rohlena, J., Kim, J. M., Neuzil, J., & Park, S. (2023). Non-bioenergetic roles of mitochondrial GPD2 promote tumor progression. Theranostics, 13(2), 438-457. https://doi.org/10.7150/thno.75973
Oh, S., Jo, S., Kim, H. S., Mai, V. H., Endaya, B., Neuzil, J., Jung, K. H., Hong, S. S., Kim, J. M., & Park, S. (2023, Jan 17). Chemical Biopsy for GNMT as Noninvasive and Tumorigenesis-Relevant Diagnosis of Liver Cancer. Anal Chem, 95(2), 1184-1192. https://doi.org/10.1021/acs.analchem.2c03944
Plavec T.V., Klemenčič K., Kuchař M., Malý P., Berlec A. (2023) “Secretion and surface display of binders of IL-23/IL-17 cytokines and their receptors in Lactococcus lactis as a therapeutic approach against inflammation”. European Journal of Pharmaceutical Sciences, 190, 106568.doi:10.1016/j.ejps.2023.106568
Shukla, S., Komarek, J., Novakova, Z., Nedvedova, J., Ustinova, K., Vankova, P., Kadek, A., Uetrecht, C., Mertens, H., & Barinka, C. (2023, Feb). In-solution structure and oligomerization of human histone deacetylase 6 - an integrative approach. FEBS J, 290(3), 821-836. https://doi.org/10.1111/febs.16616
Song X., Kirtipal N., Lee S., Malý P., Bharadwaj S. (2023) “Current therapeutic targets and multifaceted physiological impacts of caffeine”.Phytotherapy Research. 1–41. DOI: 10.1002/ptr.8000

2022

Androvic, P., Benesova, S., Rohlova, E., Kubista, M., & Valihrach, L. (2022). Small RNA-Sequencing for Analysis of Circulating miRNAs: Benchmark Study. J Mol Diagn. https://doi.org/10.1016/j.jmoldx.2021.12.006
Antalikova, J., Secova, P., Michalkova, K., Horovska, L., Palenikova, V., & Jankovicova, J. (2022, Jun 1). Expression of alphaV integrin and its potential partners in bull reproductive tissues, germ cells and spermatozoa. Int J Biol Macromol, 209(Pt A), 542-551. https://doi.org/10.1016/j.ijbiomac.2022.04.001
Berman, H. M., Lawson, C. L., & Schneider, B. (2022). Developing Community Resources for Nucleic Acid Structures. Life (Basel), 12(4). https://doi.org/10.3390/life12040540
Biedermannova, L., Cerny, J., Maly, M., Nekardova, M., & Schneider, B. (2022, Aug 1). Knowledge-based prediction of DNA hydration using hydrated dinucleotides as building blocks. Acta Crystallogr D Struct Biol, 78(Pt 8), 1032-1045. https://doi.org/10.1107/S2059798322006234
Bim, D., Navratil, M., Gutten, O., Konvalinka, J., Kutil, Z., Culka, M., Navratil, V., Alexandrova, A. N., Barinka, C., & Rulisek, L. (2022). Predicting Effects of Site-Directed Mutagenesis on Enzyme Kinetics by QM/MM and QM Calculations: A Case of Glutamate Carboxypeptidase II. J Phys Chem B, 126(1), 132-143. https://doi.org/10.1021/acs.jpcb.1c09240
Blaha, J., Skalova, T., Kalouskova, B., Skorepa, O., Cmunt, D., Grobarova, V., Pazicky, S., Polachova, E., Abreu, C., Stransky, J., Koval, T., Duskova, J., Zhao, Y., Harlos, K., Hasek, J., Dohnalek, J., & Vanek, O. (2022, Aug 26). Structure of the human NK cell NKR-P1:LLT1 receptor:ligand complex reveals clustering in the immune synapse. Nature Communications, 13(1), 5022. https://doi.org/10.1038/s41467-022-32577-6
Bosakova, T., Tockstein, A., Bosakova, Z., & Komrskova, K. (2022, Jun 25). Kinetic Study of 17alpha-Estradiol Mechanism during Rat Sperm Capacitation. Molecules, 27(13). https://doi.org/10.3390/molecules27134092
de la Iglesia, A., Jauregi, P., Jodar, M., Barrachina, F., Ded, L., Mallofré, C., Rodríguez-Carunchio, L., Corral, J.M., Ballescà, J.L., Komrskova, K.,Castillo, J., Oliva, R. (2022) H4K5 „Butyrylation Coexist with Acetylation during Human Spermiogenesis and Are Retained in the Mature Sperm Chromatin“ Int. J. Mol. Sci. 23(12398). https://doi.org/10.3390/ijms232012398
Dohnalek, J., & Skalova, T. (2022). C-type lectin-(like) fold - Protein-protein interaction patterns and utilization. Biotechnol Adv, 58, 107944. https://doi.org/10.1016/j.biotechadv.2022.107944
Filova, I., Pysanenko, K., Tavakoli, M., Vochyanova, S., Dvorakova, M., Bohuslavova, R., Smolik, O., Fabriciova, V., Hrabalova, P., Benesova, S., Valihrach, L., Cerny, J., Yamoah, E.N., Syka, J., Fritzsch, B., Pavlinkova, G. (2022) "ISL1 is necessary for auditory neuron development and contributes towards tonotopic organization"
Gazo, I., Naraine, R., Lebeda, I., Tomcala, A., Dietrich, M., Franek, R., Psenicka, M., & Sindelka, R. (2022, Jun 7). Transcriptome and Proteome Analyses Reveal Stage-Specific DNA Damage Response in Embryos of Sturgeon (Acipenser ruthenus). Int J Mol Sci, 23(12). https://doi.org/10.3390/ijms23126392
Groza, Y., Jemelkova, J., Kafkova, L. R., Maly, P., & Raska, M. (2022). IL-6 and its role in IgA nephropathy development. Cytokine Growth Factor Rev. https://doi.org/10.1016/j.cytogfr.2022.04.001
Iegorova, V., Naraine, R., Psenicka, M., Zelazowska, M., Sindelka, R. (2022) "Comparison of RNA localization during oogenesis within Acipenser ruthenus and Xenopus laevis" Front. Cell Dev. Biol. 10(982732). doi: 10.3389/fcell.2022.982732
Kipouros, I., Stanczak, A., Ginsbach, J. W., Andrikopoulos, P. C., Rulisek, L., & Solomon, E. I. (2022, Aug 16). Elucidation of the tyrosinase/O2/monophenol ternary intermediate that dictates the monooxygenation mechanism in melanin biosynthesis. Proc Natl Acad Sci U S A, 119(33), e2205619119. https://doi.org/10.1073/pnas.2205619119
Kirtipal, N., Kumar, S., Dubey, S. K., Dwivedi, V. D., Gireesh Babu, K., Maly, P., & Bharadwaj, S. (2022). Understanding on the possible routes for SARS CoV-2 invasion via ACE2 in the host linked with multiple organs damage. Infect Genet Evol, 99, 105254. https://doi.org/10.1016/j.meegid.2022.105254
Kracikova, L., Ziolkowska, N., Androvic, L., Klimankova, I., Cerveny, D., Vit, M., Pompach, P., Konefal, R., Janouskova, O., Hruby, M., Jirak, D., & Laga, R. (2022). Phosphorus-Containing Polymeric Zwitterion: A Pioneering Bioresponsive Probe for (31) P-Magnetic Resonance Imaging. Macromol Biosci, 22(5), e2100523. https://doi.org/10.1002/mabi.202100523
Kumar, S., El-Kafrawy, S. A., Bharadwaj, S., Maitra, S. S., Alandijany, T. A., Faizo, A. A., Khateb, A. M., Dwivedi, V. D., & Azhar, E. I. (2022). Discovery of Bispecific Lead Compounds from Azadirachta indica against ZIKA NS2B-NS3 Protease and NS5 RNA Dependent RNA Polymerase Using Molecular Simulations. Molecules, 27(8). https://doi.org/ARTN 256210.3390/molecules27082562
Kumar, S., Kumar, G. S., Maitra, S. S., Maly, P., Bharadwaj, S., Sharma, P., & Dwivedi, V. D. (2022, Aug 10). Viral informatics: bioinformatics-based solution for managing viral infections. Brief Bioinform. https://doi.org/10.1093/bib/bbac326
Magalhaes-Novais, S., Blecha, J., Naraine, R., Mikesova, J., Abaffy, P., Pecinova, A., Milosevic, M., Bohuslavova, R., Prochazka, J., Khan, S., Novotna, E., Sindelka, R., Machan, R., Dewerchin, M., Vlcak, E., Kalucka, J., Stemberkova Hubackova, S., Benda, A., Goveia, J., Mracek, T., Barinka, C., Carmeliet, P., Neuzil, J., Rohlenova, K., & Rohlena, J. (2022). Mitochondrial respiration supports autophagy to provide stress resistance during quiescence. Autophagy, 1-18. https://doi.org/10.1080/15548627.2022.2038898
Novakova, Z., Mikesova, J., Ondrakova, M., Kutil, Z., Vesela, K., Martasek, P., & Barinka, C. (2022). Molecular characterization of a novel His333Arg variant of human protoporphyrinogen oxidase IX. Biochem Biophys Res Commun, 588, 182-186. https://doi.org/10.1016/j.bbrc.2021.12.062 (ASEP)
Petitpre, C., Faure, L., Uhl, P., Fontanet, P., Filova, I., Pavlinkova, G., Adameyko, I., Hadjab, S., & Lallemend, F. (2022, Jul 5). Single-cell RNA-sequencing analysis of the developing mouse inner ear identifies molecular logic of auditory neuron diversification. Nature Communications, 13(1), 3878. https://doi.org/10.1038/s41467-022-31580-1
Simonik, O., Bubenickova, F., Tumova, L., Frolikova, M., Sur, V. P., Beran, J., Havlikova, K., Hackerova, L., Spevakova, D., Komrskova, K., & Postlerova, P. (2022). Boar Sperm Cryopreservation Improvement Using Semen Extender Modification by Dextran and Pentaisomaltose. Animals (Basel), 12(7). https://doi.org/10.3390/ani12070868
Smieszek, A., Marcinkowska, K., Pielok, A., Sikora, M., Valihrach, L., Carnevale, E., & Marycz, K. (2022). Obesity Affects the Proliferative Potential of Equine Endometrial Progenitor Cells and Modulates Their Molecular Phenotype Associated with Mitochondrial Metabolism. Cells, 11(9). https://doi.org/10.3390/cells11091437
Sur, V. P., Simonik, O., Novotna, M., Mazumdar, A., Liska, F., Vimberg, V., & Komrskova, K. (2022, Aug 3). Dynamic study of small toxic hydrophobic proteins PepA1 and PepG1 of Staphylococcus aureus. Int J Biol Macromol. https://doi.org/10.1016/j.ijbiomac.2022.07.192
Zessin, M., Meleshin, M., Praetorius, L., Sippl, W., Barinka, C., & Schutkowski, M. (2022). Uncovering Robust Delactoylase and Depyruvoylase Activities of HDAC Isoforms. ACS Chem Biol. https://doi.org/10.1021/acschembio.1c00863

2021

Abashkin, V., Pedziwiatr-Werbicka, E., Gomez, R., de la Mata, F. J., Dzmitruk, V., Shcharbin, D., & Bryszewska, M. (2021). "Prospects of Cationic Carbosilane Dendronized Gold Nanoparticles as Non-viral Vectors for Delivery of Anticancer siRNAs siBCL-xL and siMCL-1." Pharmaceutics, 13(10). https://doi.org/10.3390/pharmaceutics13101549 (ASEP)
Andersson, D., Kristiansson, H., Kubista, M., & Stahlberg, A. (2021). Ultrasensitive circulating tumor DNA analysis enables precision medicine: experimental workflow considerations. Expert Review of Molecular Diagnostics, 1-12. https://doi.org/10.1080/14737159.2021.1889371 (ASEP)
Andrikopoulos, P. C., Chaudhari, A. S., Liu, Y., Konold, P. E., Kennis, J. T. M., Schneider, B., & Fuertes, G. (2021, Jun 30). QM calculations predict the energetics and infrared spectra of transient glutamine isomers in LOV photoreceptors. Phys Chem Chem Phys, 23(25), 13934-13950. https://doi.org/10.1039/d1cp00447f
Awad, M., Nedvedova, J., & Nedved, O. (2021, Mar). Thermal plasticity of antioxidative activity in fresh adults of Harmonia axyridis (Coleoptera: Coccinellidae). African Entomology, 29(1), 125-132. https://doi.org/10.4001/003.029.0125 (ASEP)
Benesova, S., Kubista, M., & Valihrach, L. (2021, May 27). Small RNA-Sequencing: Approaches and Considerations for miRNA Analysis. Diagnostics (Basel), 11(6). https://doi.org/10.3390/diagnostics11060964
Bohuslavova, R., Smolik, O., Malfatti, J., Berkova, Z., Novakova, Z., Saudek, F., & Pavlinkova, G. (2021). NEUROD1 Is Required for the Early alpha and beta Endocrine Differentiation in the Pancreas. Int J Mol Sci, 22(13). https://doi.org/10.3390/ijms22136713 (ASEP
Bondar, A., Rybakova, O., Melcr, J., Dohnalek, J., Khoroshyy, P., Tichacek, O., Timr, S., Miclea, P., Sakhi, A., Markova, V., & Lazar, J. (2021, Feb 12). Quantitative linear dichroism imaging of molecular processes in living cells made simple by open software tools. Commun Biol, 4(1), 189. https://doi.org/10.1038/s42003-021-01694-1
Boukalova, S., Ezrova, Z., & Neuzil, J. (2021, Aug 3). Mechanisms of resistance to mitochondria-targeted therapy in pancreatic cancer. Oncotarget, 12(16), 1627-1628. https://doi.org/10.18632/oncotarget.27976
Bukovsky, A. (2021, Jan). Immunology of tissue homeostasis, ovarian cancer growth and regression, and long lasting cancer immune prophylaxis - review of literature. Histol Histopathol, 36(1), 31-46. https://doi.org/10.14670/HH-18-261
Dedecek, J., Tabor, E., Andrikopoulos, P. C., & Sklenak, S. (2021, May 15). Splitting dioxygen over distant binuclear transition metal cationic sites in zeolites. Effect of the transition metal cation. International Journal of Quantum Chemistry, 121(10). https://doi.org/ARTN e2661110.1002/qua.26611 (ASEP)
Del Amo-Maestro, L., Sagar, A., Pompach, P., Goulas, T., Scavenius, C., Ferrero, D. S., Castrillo-Briceno, M., Taules, M., Enghild, J. J., Bernado, P., & Gomis-Ruth, F. X. (2021, Mar 24). An Integrative Structural Biology Analysis of Von Willebrand Factor Binding and Processing by ADAMTS-13 in Solution. J Mol Biol, 433(13), 166954. https://doi.org/10.1016/j.jmb.2021.166954
Dlouha, D., Ivak, P., Netuka, I., Benesova, S., Tucanova, Z., & Hubacek, J. A. (2021). An Integrative Study of Aortic mRNA/miRNA Longitudinal Changes in Long-Term LVAD Support. Int J Mol Sci, 22(14). https://doi.org/10.3390/ijms22147414 (ASEP)
Dohnalek, J., Duskova, J., Tishchenko, G., Kolenko, P., Skalova, T., Novak, P., Fejfarova, K., & Simunek, J. (2021, Oct 2). Chitinase Chit62J4 Essential for Chitin Processing by Human Microbiome Bacterium Clostridium paraputrificum J4. Molecules, 26(19). https://doi.org/10.3390/molecules26195978
Dostal, J., Brynda, J., Vankova, L., Zia, S. R., Pichova, I., Heidingsfeld, O., & Lepsik, M. (2021, Dec). Structural determinants for subnanomolar inhibition of the secreted aspartic protease Sapp1p from Candida parapsilosis. J Enzyme Inhib Med Chem, 36(1), 914-921. https://doi.org/10.1080/14756366.2021.1906664
Elliott, K. L., Kersigo, J., Lee, J. H., Jahan, I., Pavlinkova, G., Fritzsch, B., & Yamoah, E. N. (2021). Developmental Changes in Peripherin-eGFP Expression in Spiral Ganglion Neurons. Front Cell Neurosci, 15, 678113. https://doi.org/10.3389/fncel.2021.678113 (ASEP)
Elliott, K. L., Pavlinkova, G., Chizhikov, V. V., Yamoah, E. N., & Fritzsch, B. (2021a, Apr 18). Development in the Mammalian Auditory System Depends on Transcription Factors. Int J Mol Sci, 22(8). https://doi.org/10.3390/ijms22084189
Elliott, K. L., Pavlinkova, G., Chizhikov, V. V., Yamoah, E. N., & Fritzsch, B. (2021b). Neurog1, Neurod1, and Atoh1 are essential for spiral ganglia, cochlear nuclei, and cochlear hair cell development. Fac Rev, 10, 47. https://doi.org/10.12703/r/10-47
Ezrova, Z., Nahacka, Z., Stursa, J., Werner, L., Vlcak, E., Kralova Viziova, P., Berridge, M. V., Sedlacek, R., Zobalova, R., Rohlena, J., Boukalova, S., & Neuzil, J. (2021, Mar 8). SMAD4 loss limits the vulnerability of pancreatic cancer cells to complex I inhibition via promotion of mitophagy. Oncogene. https://doi.org/10.1038/s41388-021-01726-4 (ASEP)
Fernandez, C., Torrealba, N., Altamirano, F., Garrido-Moreno, V., Vasquez-Trincado, C., Flores-Vergara, R., Lopez-Crisosto, C., Ocaranza, M. P., Chiong, M., Pedrozo, Z., & Lavandero, S. (2021). Polycystin-1 is required for insulin-like growth factor 1-induced cardiomyocyte hypertrophy. Plos One, 16(8), e0255452. https://doi.org/10.1371/journal.pone.0255452 (ASEP)
Gaetani, S., Galzignati, L., Marcati, M., Durazzi, P., Cianella, A., Mocheggiani, V., Monaco, F., Bracci, M., Neuzil, J., Tomasetti, M., Amati, M., & Santarelli, L. (2021, Aug 13). Mitochondrial function as related to psychological distress in health care professionals. Psychosom Med. https://doi.org/10.1097/PSY.0000000000001000
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Hadrava Vanova, K., Yang, C., Meuter, L., Neuzil, J., & Pacak, K. (2021, Jul 27). Reactive Oxygen Species: A Promising Therapeutic Target for SDHx-Mutated Pheochromocytoma and Paraganglioma. Cancers (Basel), 13(15). https://doi.org/10.3390/cancers13153769
Chumak, T., Tothova, D., Filova, I., Bures, Z., Popelar, J., Pavlinkova, G., & Syka, J. (2021, Apr 26). Overexpression of Isl1 under the Pax2 Promoter, Leads to Impaired Sound Processing and Increased Inhibition in the Inferior Colliculus. Int J Mol Sci, 22(9). https://doi.org/10.3390/ijms22094507
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Jenickova, I., Kasparek, P., Petrezselyova, S., Elias, J., Prochazka, J., Kopkanova, J., Navratil, M., Barinka, C., & Sedlacek, R. (2021, Jul). Efficient allele conversion in mouse zygotes and primary cells based on electroporation of Cre protein. Methods, 191, 87-94. https://doi.org/10.1016/j.ymeth.2020.07.005
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Kralovicova, J., Borovska, I., Pengelly, R., Lee, E., Abaffy, P., Sindelka, R., Grutzner, F., & Vorechovsky, I. (2021, Feb 8). Restriction of an intron size en route to endothermy. Nucleic Acids Research. https://doi.org/10.1093/nar/gkab046
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Kucera, O., Siahaan, V., Janda, D., Dijkstra, S. H., Pilatova, E., Zatecka, E., Diez, S., Braun, M., & Lansky, Z. (2021, Jul 28). Anillin propels myosin-independent constriction of actin rings. Nature Communications, 12(1), 4595. https://doi.org/10.1038/s41467-021-24474-1
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Lee, K. E., Bharadwaj, S., Sahoo, A. K., Yadava, U., & Kang, S. G. (2021, Dec 30). Determination of tyrosinase-cyanidin-3-O-glucoside and (-/+)-catechin binding modes reveal mechanistic differences in tyrosinase inhibition. Sci Rep, 11(1), 24494. https://doi.org/10.1038/s41598-021-03569-1
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2020

Andersson, D., Kubista, M., & Stahlberg, A. (2020). "Liquid biopsy analysis in cancer diagnostics." Mol Aspects Med, 72, 100839.
Andrikopoulos, P. C., Y. Liu, A. Picchiotti, N. Lenngren, M. Kloz, A. S. Chaudhari, M. Precek, M. Rebarz, J. Andreasson, J. Hajdu, B. Schneider and G. Fuertes (2020). "Femtosecond-to-nanosecond dynamics of flavin mononucleotide monitored by stimulated Raman spectroscopy and simulations." Phys Chem Chem Phys 22(12): 6538-6552.
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Bosakova, T., A. Tockstein, N. Sebkova, R. Cabala and K. Komrskova (2020). "Kinetic Model of the Action of 17α-Ethynylestradiol on the Capacitation of Mouse Sperm, Monitored by HPLC-MS/MS." Catalysts 10(1).
Boukalova, S., S. Hubackova, M. Milosevic, Z. Ezrova, J. Neuzil and J. Rohlena (2020). "Dihydroorotate dehydrogenase in oxidative phosphorylation and cancer." Biochim Biophys Acta Mol Basis Dis 1866(6): 165759.
Cardinale, J., Roscher, M., Schaefer, M., Geerlings, M., Benesova, M., Bauder-Wust, U., Remde, Y., Eder, M., Novakova, Z., Motlova, L., Barinka, C., Giesel, F. L., & Kopka, K. (2020). "Development of PSMA-1007 - Related Series of (18)F-Labeled Glu-ureido type PSMA inhibitors." J Med Chem.
Cerny, J., Bozikova, P., Maly, M., Tykac, M., Biedermannova, L., & Schneider, B. (2020). Structural alphabets for conformational analysis of nucleic acids available at dnatco.datmos.org. Acta Crystallogr D Struct Biol, 76(Pt 9), 805-813.
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Dostalova, P., Zatecka, E., Ded, L., Elzeinova, F., Valaskova, E., Kubatova, A., Korenkova, V., Langerova, L., Komrskova, K., & Peknicova, J. (2020). Gestational and pubertal exposure to low dose of di-(2-ethylhexyl) phthalate impairs sperm quality in adult mice. Reprod Toxicol, 96, 175-184.
Dvorakova, M., I. Macova, R. Bohuslavova, M. Anderova, B. Fritzsch and G. Pavlinkova (2020). "Early ear neuronal development, but not olfactory or lens development, can proceed without SOX2." Dev Biol 457(1): 43-56.
Filova I, Dvorakova M, Bohuslavova R, Pavlinek A, Elliott KL, Vochyanova S, Fritzsch B, Pavlinkova G."Combined Atoh1 and Neurod1 Deletion Reveals Autonomous Growth of Auditory Nerve Fibers."Molecular Neurobiology (2020) 57: 5307–5323
Fialova, J., Hrabak, J., Studentova, V., Kavan, D., Pompach, P., & Novak, P. (2020). Three-Dimensional Printed Target Plates for Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry. Anal Chem, 92(19), 12783-12788.
Frolikova, M., T. Otcenaskova, E. Valaskova, P. Postlerova, R. Stopkova, P. Stopka and K. Komrskova (2020). "The Role of Taste Receptor mTAS1R3 in Chemical Communication of Gametes." Int J Mol Sci 21(7).
Fuentes-Retamal, S., C. Sandoval-Acuna, L. Peredo-Silva, D. Guzman-Rivera, M. Pavani, N. Torrealba, J. Truksa, V. Castro-Castillo, M. Catalan, U. Kemmerling, F. A. Urra and J. Ferreira (2020). "Complex Mitochondrial Dysfunction Induced by TPP(+)-Gentisic Acid and Mitochondrial Translation Inhibition by Doxycycline Evokes Synergistic Lethality in Breast Cancer Cells." Cells 9(2).
Gaetani, S., F. Monaco, F. Alessandrini, A. Tagliabracci, A. Sabbatini, M. Bracci, M. Valentino, J. Neuzil, M. Amati, L. Santarelli and M. Tomasetti (2020). "Mechanism of miR-222 and miR-126 regulation and its role in asbestos-induced malignancy." Int J Biochem Cell Biol: 105700.
Gazo, I., Franek, R., Sindelka, R., Lebeda, I., Shivaramu, S., Psenicka, M., & Steinbach, C. (2020). "Ancient Sturgeons Possess Effective DNA Repair Mechanisms: Influence of Model Genotoxicants on Embryo Development of Sterlet, Acipenser ruthenus." Int J Mol Sci, 22(1).
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Hapuarachchige, S., C. T. Huang, M. C. Donnelly, C. Barinka, S. E. Lupold, M. G. Pomper and D. Artemov (2020). "Cellular Delivery of Bioorthogonal Pretargeting Therapeutics in PSMA-Positive Prostate Cancer." Mol Pharm 17(1): 98-108.
Hubackova, S., E. Davidova, S. Boukalova, J. Kovarova, M. Bajzikova, A. Coelho, M. G. Terp, H. J. Ditzel, J. Rohlena and J. Neuzil (2020). "Replication and ribosomal stress induced by targeting pyrimidine synthesis and cellular checkpoints suppress p53-deficient tumors." Cell Death Dis 11(2): 110.
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Jankovicova, J., Z. Neuerova, P. Secova, M. Bartokova, F. Bubenickova, K. Komrskova, P. Postlerova and J. Antalikova (2020). "Tetraspanins in mammalian reproduction: spermatozoa, oocytes and embryos." Med Microbiol Immunol.
Jankovicova, J., M. Frolikova, V. Palenikova, E. Valaskova, J. Cerny, P. Secova, M. Bartokova, L. Horovska, P. Manaskova-Postlerova, J. Antalikova and K. Komrskova (2020). "Expression and distribution of CD151 as a partner of alpha6 integrin in male germ cells." Scientific Reports 10(1).
Kim, K., H. Kwon, C. Barinka, L. Motlova, S. Nam, D. Choi, H. Ha, H. Nam, S. H. Son, I. Minn, M. G. Pomper, X. Yang, Z. Kutil and Y. Byun (2020). "Novel beta- and gamma-Amino Acid-Derived Inhibitors of Prostate-Specific Membrane Antigen." J Med Chem.
Kolenicova, D., Tureckova, J., Pukajova, B., Harantova, L., Kriska, J., Kirdajova, D., Vorisek, I., Kamenicka, M., Valihrach, L., Androvic, P., Kubista, M., Vargova, L., & Anderova, M. (2020). "High potassium exposure reveals the altered ability of astrocytes to regulate their volume in the aged hippocampus of GFAP/EGFP mice." Neurobiol Aging, 86, 162-181.
Lampignano, R., Neumann, M. H. D., Weber, S., Kloten, V., Herdean, A., Voss, T., Groelz, D., Babayan, A., Tibbesma, M., Schlumpberger, M., Chemi, F., Rothwell, D. G., Wikman, H., Galizzi, J. P., Riise Bergheim, I., Russnes, H., Mussolin, B., Bonin, S., Voigt, C., Musa, H., Pinzani, P., Lianidou, E., Brady, G., Speicher, M. R., Pantel, K., Betsou, F., Schuuring, E., Kubista, M., Ammerlaan, W., Sprenger-Haussels, M., Schlange, T., & Heitzer, E. (2020). "Multicenter Evaluation of Circulating Cell-Free DNA Extraction and Downstream Analyses for the Development of Standardized (Pre)analytical Work Flows." Clin Chem, 66(1), 149-160.
Liu, Y., Pang, Y., Zhu, B., Uher, O., Caisova, V., Huynh, T. T., Taieb, D., Hadrava Vanova, K., Ghayee, H. K., Neuzil, J., Levine, M., Yang, C., & Pacak, K. (2020). "Therapeutic Targeting of SDHB-Mutated Pheochromocytoma/Paraganglioma with Pharmacologic Ascorbic Acid." Clin Cancer Res, 26(14), 3868-3880.
Maly, M., Diederichs, K., Dohnalek, J., & Kolenko, P. (2020). "Paired refinement under the control of PAIREF." Iucrj, 7, 681-692.
Naraine, R., Abaffy, P., Sidova, M., Tomankova, S., Pocherniaieva, K., Smolik, O., Kubista, M., Psenicka, M., & Sindelka, R. (2020). "NormQ: RNASeq normalization based on RT-qPCR derived size factors." Comput Struct Biotechnol J, 18, 1173-1181.
Novakova, Z., Belousova, N., Foss, C. A., Havlinova, B., Gresova, M., Das, G., Lisok, A., Prada, A., Barinkova, M., Hubalek, M., Pomper, M. G., & Barinka, C. (2020). Engineered Fragments of the PSMA-Specific 5D3 Antibody and Their Functional Characterization. Int J Mol Sci, 21(18).
Orengo, C., Velankar, S., Wodak, S., Zoete, V., Bonvin, A., Elofsson, A., Feenstra, K. A., Gerloff, D. L., Hamelryck, T., Hancock, J. M., Helmer-Citterich, M., Hospital, A., Orozco, M., Perrakis, A., Rarey, M., Soares, C., Sussman, J. L., Thornton, J. M., Tuffery, P., Tusnady, G., Wierenga, R., Salminen, T., & Schneider, B. (2020). "A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community)." F1000Res, 9.
Pavlinkova G. "Molecular Aspects of the Development and Function of Auditory Neurons." Int. J.MolSci. 2020, 22(1), 131
Pizl, M., Picchiotti, A., Rebarz, M., Lenngren, N., Yingliang, L., Zalis, S., Kloz, M., & Vlcek, A. (2020). "Time-Resolved Femtosecond Stimulated Raman Spectra and DFT Anharmonic Vibrational Analysis of an Electronically Excited Rhenium Photosensitizer." J Phys Chem A, 124(7), 1253-1265.
Polovinkin, V., Khakurel, K., Babiak, M., Angelov, B., Schneider, B., Dohnalek, J., Andreasson, J., & Hajdu, J. (2020). "Demonstration of electron diffraction from membrane protein crystals grown in a lipidic mesophase after lamella preparation by focused ion beam milling at cryogenic temperatures." J Appl Crystallogr, 53(Pt 6), 1416-1424.
Raninga, P. V., Lee, A., Sinha, D., Dong, L. F., Datta, K. K., Lu, X., Kalita-de Croft, P., Dutt, M., Hill, M., Pouliot, N., Gowda, H., Kalimutho, M., Neuzil, J., & Khanna, K. K. (2020). "Marizomib suppresses triple-negative breast cancer via proteasome and oxidative phosphorylation inhibition." Theranostics, 10(12), 5259-5275.
Shen, S., M. Svoboda, G. Zhang, M. A. Cavasin, L. Motlova, T. A. McKinsey, J. H. Eubanks, C. Barinka and A. P. Kozikowski (2020). "Structural and in Vivo Characterization of Tubastatin A, a Widely Used Histone Deacetylase 6 Inhibitor." ACS Med Chem Lett 11(5): 706-712.
Schneegans, S., Luck, L., Besler, K., Bluhm, L., Stadler, J. C., Staub, J., Greinert, R., Volkmer, B., Kubista, M., Gebhardt, C., Sartori, A., Irwin, D., Serkkola, E., Af Hallstrom, T., Lianidou, E., Sprenger-Haussels, M., Hussong, M., Mohr, P., Schneider, S. W., Shaffer, J., Pantel, K., & Wikman, H. (2020). "Pre-analytical factors affecting the establishment of a single tube assay for multiparameter liquid biopsy detection in melanoma patients." Mol Oncol, 14(5), 1001-1015.
Skalova, T., Lengalova, A., Dohnalek, J., Harlos, K., Mihalcin, P., Kolenko, P., Stranava, M., Blaha, J., Shimizu, T., & Martinkova, M. (2020). "Disruption of the dimerization interface of the sensing domain in the dimeric heme-based oxygen sensor AfGcHK abolishes bacterial signal transduction." J Biol Chem, 295(6), 1587-1597.
Skorepa, O., Pazicky, S., Kalouskova, B., Blaha, J., Abreu, C., Jecmen, T., Rosulek, M., Fish, A., Sedivy, A., Harlos, K., Dohnalek, J., Skalova, T., & Vanek, O. (2020). "Natural Killer Cell Activation Receptor NKp30 Oligomerization Depends on Its N-Glycosylation." Cancers (Basel), 12(7).
Sreerangaraja Urs, D. B., W. H. Wu, K. Komrskova, P. Postlerova, Y. F. Lin, C. R. Tzeng and S. H. Kao (2020). "Mitochondrial Function in Modulating Human Granulosa Cell Steroidogenesis and Female Fertility." Int J Mol Sci 21(10).
Tumova, L., M. Zigo, P. Sutovsky, M. Sedmikova and P. Postlerova (2020). "The Ubiquitin-Proteasome System Does Not Regulate the Degradation of Porcine beta-Microseminoprotein during Sperm Capacitation." Int J Mol Sci 21(11).
Ustinova, K., Z. Novakova, M. Saito, M. Meleshin, J. Mikesova, Z. Kutil, P. Baranova, B. Havlinova, M. Schutkowski, P. Matthias and C. Barinka (2020). "The disordered N-terminus of HDAC6 is a microtubule-binding domain critical for efficient tubulin deacetylation." J Biol Chem.
Valdinocci, D., Kovarova, J., Neuzil, J., & Pountney, D. L. (2020). "Alpha-Synuclein Aggregates Associated with Mitochondria in Tunnelling Nanotubes." Neurotox Res.
Valihrach, L., P. Androvic and M. Kubista (2020). "Circulating miRNA analysis for cancer diagnostics and therapy." Mol Aspects Med 72: 100825.
Vetyskova, V., Zouharova, M., Bednarova, L., Vanek, O., Sazelova, P., Kasicka, V., Vymetal, J., Srp, J., Rumlova, M., Charnavets, T., Postulkova, K., Reseland, J. E., Bousova, K., & Vondrasek, J. (2020). "Characterization of AMBN I and II Isoforms and Study of Their Ca(2+)-Binding Properties." Int J Mol Sci, 21(23).
Viteckova Wunschova, A., Novobilsky, A., Hlozkova, J., Scheer, P., Petrokova, H., Jirik, R., Kulich, P., Bartheldyova, E., Hubatka, F., Jonas, V., Mikulik, R., Maly, P., Turanek, J., & Masek, J. (2020). "Thrombus Imaging Using 3D Printed Middle Cerebral Artery Model and Preclinical Imaging Techniques: Application to Thrombus Targeting and Thrombolytic Studies." Pharmaceutics, 12(12).
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2019

Abaffy, P., S. Tomankova, R. Naraine, M. Kubista and R. Sindelka (2019). "The role of nitric oxide during embryonic wound healing." Bmc Genomics 20(1).
Androvic, P., N. Romanyuk, L. Urdzikova-Machova, E. Rohlova, M. Kubista and L. Valihrach (2019). "Two-tailed RT-qPCR panel for quality control of circulating microRNA studies." Sci Rep 9(1): 4255.
Baert, Y., K. Dvorakova-Hortova, H. Margaryan and E. Goossens (2019). "Mouse in vitro spermatogenesis on alginate-based 3D bioprinted scaffolds." Biofabrication 11(3).
Bajzikova, M., J. Kovarova, A. R. Coelho, S. Boukalova, S. Oh, K. Rohlenova, D. Svec, S. Hubackova, B. Endaya, K. Judasova, A. Bezawork-Geleta, K. Kluckova, L. Chatre, R. Zobalova, A. Novakova, K. Vanova, Z. Ezrova, G. J. Maghzal, S. M. Novais, M. Olsinova, L. Krobova, Y. J. An, E. Davidova, Z. Nahacka, M. Sobol, T. Cunha-Oliveira, C. Sandoval-Acuna, H. Strnad, T. C. Zhang, T. Huynh, T. L. Serafim, P. Hozak, V. A. Sardao, W. J. H. Koopman, M. Ricchetti, P. J. Oliveira, F. Kolar, M. Kubista, J. Truksa, K. Dvorakova-Hortova, K. Pacak, R. Gurlich, R. Stocker, Y. Q. Zhou, M. V. Berridge, S. Park, L. F. Dong, J. Rohlena and J. Neuzil (2019). "Reactivation of Dihydroorotate Dehydrogenase-Driven Pyrimidine Biosynthesis Restores Tumor Growth of Respiration-Deficient Cancer Cells." Cell Metabolism 29(2): 399-+.
Banerjee, S. R., V. Kumar, A. Lisok, D. Plyku, Z. Novakova, M. Brummet, B. Wharram, C. Barinka, R. Hobbs and M. G. Pomper (2019). "Evaluation of (111)In-DOTA-5D3, a Surrogate SPECT Imaging Agent for Radioimmunotherapy of Prostate-Specific Membrane Antigen." J Nucl Med 60(3): 400-406.
Barinka, C., Z. Novakova, N. Hin, D. Bim, D. V. Ferraris, B. Duvall, G. Kabarriti, R. Tsukamoto, M. Budesinsky, L. Motlova, C. Rojas, B. S. Slusher, T. A. Rokob, L. Rulisek and T. Tsukamoto (2019). "Structural and computational basis for potent inhibition of glutamate carboxypeptidase II by carbamate-based inhibitors." Bioorg Med Chem 27(2): 255-264.
Bartos, O., J. Roslein, J. Kotusz, J. Paces, L. Pekarik, M. Petrtyl, K. Halacka, E. Stefkova Kasparova, J. Mendel, A. Boron, D. Juchno, A. Leska, O. Jablonska, V. Benes, M. Sidova and K. Janko (2019). "The Legacy of Sexual Ancestors in Phenotypic Variability, Gene Expression, and Homoeolog Regulation of Asexual Hybrids and Polyploids." Mol Biol Evol 36(9): 1902-1920.
Bohuslavova, R., R. Cerychova, F. Papousek, V. Olejnickova, M. Bartos, A. Gorlach, F. Kolar, D. Sedmera, G. L. Semenza and G. Pavlinkova (2019). "HIF-1alpha is required for development of the sympathetic nervous system." Proc Natl Acad Sci U S A 116(27): 13414-13423.
Cerny, J., P. Bozikova, A. Balik, S. M. Marques and L. Vyklicky (2019). "NMDA Receptor Opening and Closing-Transitions of a Molecular Machine Revealed by Molecular Dynamics." Biomolecules 9(10).
Ded, L., P. Dostalova, E. Zatecka, A. Dorosh, K. Komrskova and J. Peknicova (2019). "Fluorescent analysis of boar sperm capacitation process in vitro." Reprod Biol Endocrinol 17(1): 109.
Detavernier, A., A. Azouz, H. Shehade, M. Splittgerber, L. Van Maele, M. Nguyen, S. Thomas, Y. Achouri, D. Svec, E. Calonne, F. Fuks, G. Oldenhove and S. Goriely (2019). "Monocytes undergo multi-step differentiation in mice during oral infection by Toxoplasma gondii." Commun Biol 2(1): 472.
Fananas, E. M., S. Todesca, A. Sicorello, L. Masino, P. Pompach, F. Magnani, A. Pastore and A. Mattevi (2019). "On the mechanism of calcium-dependent activation of NADPH oxidase 5 (NOX5)." Febs Journal.
Fritzsch, B., K. L. Elliott and G. Pavlinkova (2019). "Primary sensory map formations reflect unique needs and molecular cues specific to each sensory system." F1000Res 8.
Fritzsch, B., K. L. Elliott, G. Pavlinkova, J. S. Duncan, M. R. Hansen and J. M. Kersigo (2019). "Neuronal Migration Generates New Populations of Neurons That Develop Unique Connections, Physiological Properties and Pathologies." Front Cell Dev Biol 7: 59.
Frolikova, M., E. Valaskova, J. Cerny, A. Lumeau, N. Sebkova, V. Palenikova, N. Sanches-Hernandez, A. Pohlova, P. Manaskova-Postlerova and K. Dvorakova-Hortova (2019). "Addressing the Compartmentalization of Specific Integrin Heterodimers in Mouse Sperm." Int J Mol Sci 20(5).
Frydlova, J., D. W. Rogalsky, J. Truksa, E. Necas, M. Vokurka and J. Krijt (2019). "Effect of stimulated erythropoiesis on liver SMAD signaling pathway in iron-overloaded and iron-deficient mice." Plos One 14(4): e0215028.
Fuertes, G., L. Nevola and S. Esteban-Martín (2019). Perspectives on drug discovery strategies based on IDPs. Intrinsically Disordered Proteins: 275-327.
Hubackova, S., M. Pribyl, L. Kyjacova, A. Moudra, R. Dzijak, B. Salovska, H. Strnad, V. Tambor, T. Imrichova, J. Svec, P. Vodicka, R. Vaclavikova, L. Rob, J. Bartek and Z. Hodny (2019). "Interferon-regulated suprabasin is essential for stress-induced stem-like cell conversion and therapy resistance of human malignancies." Mol Oncol 13(7): 1467-1489.
Ivashko-Pachima, Y., A. Hadar, I. Grigg, V. Korenkova, O. Kapitansky, G. Karmon, M. Gershovits, C. L. Sayas, R. F. Kooy, J. Attems, D. Gurwitz and I. Gozes (2019). "Discovery of autism/intellectual disability somatic mutations in Alzheimer's brains: mutated ADNP cytoskeletal impairments and repair as a case study." Mol Psychiatry.
Jankovicova, J., P. Secova, P. Manaskova-Postlerova, O. Simonik, M. Frolikova, E. Chmelikova, L. Horovska, K. Michalkova, K. Dvorakova-Hortova and J. Antalikova (2019). "Detection of CD9 and CD81 tetraspanins in bovine and porcine oocytes and embryos." Int J Biol Macromol 123: 931-938.
Jha, A., K. de Luna, C. A. Balili, C. Millo, C. A. Paraiso, A. Ling, M. K. Gonzales, B. Viana, R. Alrezk, K. T. Adams, I. Tena, A. Chen, J. Neuzil, M. Raygada, E. Kebebew, D. Taieb, M. S. O'Dorisio, T. O'Dorisio, A. C. Civelek, C. A. Stratakis, L. Mercado-Asis and K. Pacak (2019). "Clinical, Diagnostic, and Treatment Characteristics of SDHA-Related Metastatic Pheochromocytoma and Paraganglioma." Front Oncol 9: 53.
Kanzari-Mnallah, D., M. L. Efrit, J. Pavlicek, F. Vellieux, H. Boughzala and A. B. Akacha (2019). "Synthesis, Conformational Analysis and Crystal Structure of New Thioxo, Oxo, Seleno Diastereomeric Cyclophosphamides Containing 1,3,2-dioxaphosphorinane." Current Organic Chemistry 23(2): 205-213.
Kloten, V., M. H. D. Neumann, F. Di Pasquale, M. Sprenger-Haussels, J. M. Shaffer, M. Schlumpberger, A. Herdean, F. Betsou, W. Ammerlaan, T. A. Hallstrom, E. Serkkola, T. Forsman, E. Lianidou, R. Sjoback, M. Kubista, S. Bender, R. Lampignano, T. Krahn, T. Schlange and C.-I. Consortium (2019). "Multicenter Evaluation of Circulating Plasma MicroRNA Extraction Technologies for the Development of Clinically Feasible Reverse Transcription Quantitative PCR and Next-Generation Sequencing Analytical Work Flows." Clinical Chemistry 65(9): 1132-1140.
Knox, T., E. Sahakian, D. Banik, M. Hadley, E. Palmer, S. Noonepalle, J. Kim, J. Powers, M. Gracia-Hernandez, V. Oliveira, F. Cheng, J. Chen, C. Barinka, J. Pinilla-Ibarz, N. H. Lee, A. Kozikowski and A. Villagra (2019). "Selective HDAC6 inhibitors improve anti-PD-1 immune checkpoint blockade therapy by decreasing the anti-inflammatory phenotype of macrophages and down-regulation of immunosuppressive proteins in tumor cells." Sci Rep 9(1): 6136.
Kosztyu, P., M. Kuchar, J. Cerny, L. Barkocziova, M. Maly, H. Petrokova, L. Czernekova, V. Liskova, L. Raskova Kafkova, P. Knotigova, J. Masek, J. Turanek, P. Maly and M. Raska (2019). "Proteins mimicking epitope of HIV-1 virus neutralizing antibody induce virus-neutralizing sera in mice." EBioMedicine 47: 247-256.
Koval, T., L. Svecova, L. H. Ostergaard, T. Skalova, J. Duskova, J. Hasek, P. Kolenko, K. Fejfarova, J. Stransky, M. Trundova and J. Dohnalek (2019). "Trp-His covalent adduct in bilirubin oxidase is crucial for effective bilirubin binding but has a minor role in electron transfer." Scientific Reports 9: 13.
Kovaľ, T., P. Sudzinová, T. Perháčová, M. Trundová, T. Skálová, K. Fejfarová, H. Šanderová, L. Krásný, J. Dušková and J. Dohnálek (2019). "Domain structure of HelD, an interaction partner of Bacillus subtilis RNA polymerase." FEBS Letters 593(9): 996-1005.
Kovaľová, T., T. Kovaľ, E. Benešová, P. Vodičková, V. Spiwok, P. Lipovová and J. Dohnálek (2019). "Active site complementation and hexameric arrangement in the GH family 29; a structure–function study of α-l-fucosidase isoenzyme 1 from Paenibacillus thiaminolyticus." Glycobiology 29(1): 59-73.
Kozikowski, A. P., S. Shen, M. Pardo, M. T. Tavares, D. Szarics, V. Benoy, C. A. Zimprich, Z. Kutil, G. Zhang, C. Barinka, M. B. Robers, L. Van Den Bosch, J. H. Eubanks and R. S. Jope (2019). "Brain Penetrable Histone Deacetylase 6 Inhibitor SW-100 Ameliorates Memory and Learning Impairments in a Mouse Model of Fragile X Syndrome." ACS Chem Neurosci 10(3): 1679-1695.
Kuban, V., P. Srb, H. Stegnerova, P. Padrta, M. Zachrdla, Z. Jaseňáková, H. Šanderová, D. Vítovská, L. Krásný, T. Kovaľ, J. Dohnálek, J. Ziemska-Legiecka, M. Grynberg, P. Jarnot, A. Gruca, M. R. Jensen, M. Blackledge and L. Zidek (2019). "Quantitative Conformational Analysis of Functionally Important Electrostatic Interactions in the Intrinsically Disordered Region of Delta Subunit of Bacterial RNA Polymerase." Journal of the American Chemical Society 141(42): 16817-16828.
Kumar, J., D. Chudasama, C. Roberts, M. Kubista, R. Sjoback, J. Chatterjee, V. Anikin, E. Karteris and M. Hall (2019). "Detection of Abundant Non-Haematopoietic Circulating Cancer-Related Cells in Patients with Advanced Epithelial Ovarian Cancer." Cells 8(7).
Kutil, Z., J. Mikesova, M. Zessin, M. Meleshin, Z. Novakova, G. Alquicer, A. Kozikowski, W. Sippl, C. Barinka and M. Schutkowski (2019). "Continuous Activity Assay for HDAC11 Enabling Reevaluation of HDAC Inhibitors." ACS Omega 4(22): 19895-19904.
Kutil, Z., L. Skultetyova, D. Rauh, M. Meleshin, I. Snajdr, Z. Novakova, J. Mikesova, J. Pavlicek, M. Hadzima, P. Baranova, B. Havlinova, P. Majer, M. Schutkowski and C. Barinka (2019). "The unraveling of substrate specificity of histone deacetylase 6 domains using acetylome peptide microarrays and peptide libraries." FASEB J 33(3): 4035-4045.
Macova, I., K. Pysanenko, T. Chumak, M. Dvorakova, R. Bohuslavova, J. Syka, B. Fritzsch and G. Pavlinkova (2019). "Neurod1 Is Essential for the Primary Tonotopic Organization and Related Auditory Information Processing in the Midbrain." J Neurosci 39(6): 984-1004.
Monaco, F., S. Gaetani, F. Alessandrini, A. Tagliabracci, M. Bracci, M. Valentino, J. Neuzil, M. Amati, M. Bovenzi, M. Tomasetti and L. Santarelli (2019). "Exosomal transfer of miR-126 promotes the anti-tumour response in malignant mesothelioma: Role of miR-126 in cancer-stroma communication." Cancer Lett 463: 27-36.
Páleníková, V. and E. Tibenská (2019). "Význam a diagnostika antifosfolipidových protilátok u žien s poruchami reprodukcie." Newslab 10(1): 5.
Pavlicek, J., J. Stransky, T. Charnavets, P. Pompach, P. Vankova, L. Skultetyova, M. Schneiderova and J. Dohnalek (2019). "Centre of molecular structure in BIOCEV - current status and improvements." Febs Open Bio 9: 216-217.
Peter, E. K. and J. Cerny (2019). "A Hybrid Hamiltonian for the Accelerated Sampling along Experimental Restraints." Int J Mol Sci 20(2).
Petrokova, H., J. Masek, M. Kuchar, A. Viteckova Wunschova, J. Stikarova, E. Bartheldyova, P. Kulich, F. Hubatka, J. Kotoucek, P. T. Knotigova, E. Vohlidalova, R. Hezova, E. Maskova, S. Macaulay, J. E. Dyr, M. Raska, R. Mikulik, P. Maly and J. Turanek (2019). "Targeting Human Thrombus by Liposomes Modified with Anti-Fibrin Protein Binders." Pharmaceutics 11(12).
Plavec, T. V., M. Kuchar, A. Benko, V. Liskova, J. Cerny, A. Berlec and P. Maly (2019). "Engineered Lactococcus lactis Secreting IL-23 Receptor-Targeted REX Protein Blockers for Modulation of IL-23/Th17-Mediated Inflammation." Microorganisms 7(5).
Prukova, D., L. Andera, Z. Nahacka, J. Karolova, M. Svaton, M. Klanova, O. Havranek, J. Soukup, K. Svobodova, Z. Zemanova, D. Tuskova, E. Pokorna, K. Helman, K. Forsterova, M. Pacheco-Blanco, P. Vockova, A. Berkova, E. Fronkova, M. Trneny and P. Klener (2019). "Cotargeting of BCL2 with Venetoclax and MCL1 with S63845 Is Synthetically Lethal In Vivo in Relapsed Mantle Cell Lymphoma." Clin Cancer Res 25(14): 4455-4465.
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Santarelli, L., S. Gaetani, F. Monaco, M. Bracci, M. Valentino, M. Amati, C. Rubini, A. Sabbatini, E. Pasquini, N. Zanotta, M. Comar, J. Neuzil, M. Tomasetti and M. Bovenzi (2019). "Four-miRNA Signature to Identify Asbestos-Related Lung Malignancies." Cancer Epidemiol Biomarkers Prev 28(1): 119-126.
Sechovcová, H., L. Kulhavá, K. Fliegerová, M. Trundová, D. Morais, J. Mrázek and J. Kopečný (2019). "Comparison of enzymatic activities and proteomic profiles of Butyrivibrio fibrisolvens grown on different carbon sources." Proteome Science 17:2: 1-12.
Shen, S., M. Hadley, K. Ustinova, J. Pavlicek, T. Knox, S. Noonepalle, M. T. Tavares, C. A. Zimprich, G. Zhang, M. B. Robers, C. Barinka, A. P. Kozikowski and A. Villagra (2019). "Discovery of a New Isoxazole-3-hydroxamate-Based Histone Deacetylase 6 Inhibitor SS-208 with Antitumor Activity in Syngeneic Melanoma Mouse Models." J Med Chem 62(18): 8557-8577.
Schmidt-Cernohorska, M., I. Zhernov, E. Steib, M. Le Guennec, R. Achek, S. Borgers, D. Demurtas, L. Mouawad, Z. Lansky, V. Hamel and P. Guichard (2019). "Flagellar microtubule doublet assembly in vitro reveals a regulatory role of tubulin C-terminal tails." Science 363(6424): 285-288.
Siahaan, V., J. Krattenmacher, A. A. Hyman, S. Diez, A. Hernandez-Vega, Z. Lansky and M. Braun (2019). "Kinetically distinct phases of tau on microtubules regulate kinesin motors and severing enzymes." Nat Cell Biol 21(9): 1086-1092.
Simonik, O., J. Sichtar, J. Beran, P. Manaskova-Postlerova, L. Tumova, M. Dolezalova, P. Folkova, L. Stadnik and R. Rajmon (2019). "Low Density Lipoprotein - important player in increasing cryoprotective efficiency of soybean lecithin-based bull semen extenders." Animal Reproduction 16(2): 267-276.
Skalová, T., A. Lengalová, J. Dohnálek, K. Harlos, P. Mihalcin, P. Kolenko, M. Stranava, J. Bláha, T. Shimizu and M. Martínková (2019). "Disruption of the dimerization interface of the sensing domain in the dimeric heme-based oxygen sensor AfGcHK abolishes bacterial signal transduction " Journal of Biological Chemistry.
Smieszek, A., K. Kornicka, J. Szlapka-Kosarzewska, P. Androvic, L. Valihrach, L. Langerova, E. Rohlova, M. Kubista and K. Marycz (2019). "Metformin Increases Proliferative Activity and Viability of Multipotent Stromal Stem Cells Isolated from Adipose Tissue Derived from Horses with Equine Metabolic Syndrome." Cells 8(2).
Stetka, J., P. Vyhlidalova, L. Lanikova, P. Koralkova, J. Gursky, A. Hlusi, P. Flodr, S. Hubackova, J. Bartek, Z. Hodny and V. Divoky (2019). "Addiction to DUSP1 protects JAK2V617F-driven polycythemia vera progenitors against inflammatory stress and DNA damage, allowing chronic proliferation." Oncogene 38(28): 5627-5642.
Tishchenko, G., Morganti, P., Stoller, M., Kelnar, I., Mikešová, J., Kovářová, J., Hašek, J., Kužel, R., Netopilík, M., Kaprálková, L., Špírková, M., Pavlova, E., Chánová, E., Brožová, L., Pekárek, M., Kobera, L., Sedláková, Z., Kubies, D. (2019). Chitin nanofibrils-chitosan composite films: characterization and properties. Bionanotechnology to save the environment. Plant and fishery's biomass as alternative to petrol. P. Morganti. Basel: 191-226.
Tomasetti, M., S. Gaetani, F. Monaco, J. Neuzil and L. Santarelli (2019). "Epigenetic Regulation of miRNA Expression in Malignant Mesothelioma: miRNAs as Biomarkers of Early Diagnosis and Therapy." Front Oncol 9: 1293.
Tomkova, V., C. Sandoval-Acuna, N. Torrealba and J. Truksa (2019). "Mitochondrial fragmentation, elevated mitochondrial superoxide and respiratory supercomplexes disassembly is connected with the tamoxifen-resistant phenotype of breast cancer cells." Free Radic Biol Med 143: 510-521.
Valdinocci, D., R. F. Simoes, J. Kovarova, T. Cunha-Oliveira, J. Neuzil and D. L. Pountney (2019). "Intracellular and Intercellular Mitochondrial Dynamics in Parkinson's Disease." Front Neurosci 13: 930.
Wu, H., K. Yang, Z. Zhang, E. D. Leisten, Z. Li, H. Xie, J. Liu, K. A. Smith, Z. Novakova, C. Barinka and W. Tang (2019). "Development of Multifunctional Histone Deacetylase 6 Degraders with Potent Antimyeloma Activity." J Med Chem 62(15): 7042-7057.
Zahradnik, J., L. Kolarova, Y. Peleg, P. Kolenko, S. Svidenska, T. Charnavets, T. Unger, J. L. Sussman and B. Schneider (2019). "Flexible regions govern promiscuous binding of IL-24 to receptors IL-20R1 and IL-22R1." FEBS J 286(19): 3858-3873.
Zessin, M., Z. Kutil, M. Meleshin, Z. Novakova, E. Ghazy, D. Kalbas, M. Marek, C. Romier, W. Sippl, C. Barinka and M. Schutkowski (2019). "One-Atom Substitution Enables Direct and Continuous Monitoring of Histone Deacylase Activity." Biochemistry 58(48): 4777-4789.
Zigo, M., P. Manaskova-Postlerova, V. Jonakova, K. Kerns and P. Sutovsky (2019). "Compartmentalization of the proteasome-interacting proteins during sperm capacitation." Scientific Reports 9.
Zigo, M., V. Jonakova, P. Manaskova-Postlerova, K. Kerns and P. Sutovsky (2019). "Ubiquitin-proteasome system participates in the de-aggregation of spermadhesin and DQH protein during boar sperm capacitation." Reproduction.
Zucha, D., P. Androvic, M. Kubista and L. Valihrach (2019). "Performance Comparison of Reverse Transcriptases for Single-Cell Studies." Clin Chem.

2018

Trundová, M., T. Kovaľ, R. J. Owens, K. Fejfarová, J. Dušková, P. Kolenko and J. Dohnálek (2018 ). "Highly stable single-strand-specific 3′-nuclease/nucleotidase from Legionella pneumophila." International Journal of Biological Macromolecules 114: 776-787.
Andersson, D., D. Svec, C. Pedersen, J. R. Henriksen and A. Stahlberg (2018). "Preamplification with dUTP and Cod UNG Enables Elimination of Contaminating Amplicons." Int J Mol Sci 19(10).
Berridge, M. V., C. Crasso and J. Neuzil (2018). "Mitochondrial Genome Transfer to Tumor Cells Breaks The Rules and Establishes a New Precedent in Cancer Biology." Mol Cell Oncol 5(5): e1023929.
Bezawork-Geleta, A., H. Wen, L. F. Dong, B. Yan, J. Vider, S. Boukalova, L. Krobova, K. Vanova, R. Zobalova, M. Sobol, P. Hozak, S. M. Novais, V. Caisova, P. Abaffy, R. Naraine, Y. Pang, T. Zaw, P. Zhang, R. Sindelka, M. Kubista, S. Zuryn, M. P. Molloy, M. V. Berridge, K. Pacak, J. Rohlena, S. Park and J. Neuzil (2018). "Alternative assembly of respiratory complex II connects energy stress to metabolic checkpoints." Nature Communications 9.
Bosakova, T., A. Tockstein, N. Sebkova, O. Simonik, H. Adamusova, J. Albrechtova, T. Albrecht, Z. Bosakova and K. Dvorakova-Hortova (2018). "New Insight into Sperm Capacitation: A Novel Mechanism of 17beta-Estradiol Signalling." Int J Mol Sci 19(12).
Cerychova, R. and G. Pavlinkova (2018). "HIF-1, Metabolism, and Diabetes in the Embryonic and Adult Heart." Front Endocrinol (Lausanne) 9: 460.
Cerychova, R., R. Bohuslavova, F. Papousek, D. Sedmera, P. Abaffy, V. Benes, F. Kolar and G. Pavlinkova (2018). "Adverse effects of Hif1a mutation and maternal diabetes on the offspring heart." Cardiovasc Diabetol 17(1): 68.
Cuyas, E., S. Fernandez-Arroyo, S. Verdura, R. A. Garcia, J. Stursa, L. Werner, E. Blanco-Gonzalez, M. Montes-Bayon, J. Joven, B. Viollet, J. Neuzil and J. A. Menendez (2018). "Metformin regulates global DNA methylation via mitochondrial one-carbon metabolism." Oncogene 37(7): 963-970.
Cuyas, E., S. Verdura, L. Llorach-Pares, S. Fernandez-Arroyo, F. Luciano-Mateo, N. Cabre, J. Stursa, L. Werner, B. Martin-Castillo, B. Viollet, J. Neuzil, J. Joven, A. Nonell-Canals, M. Sanchez-Martinez and J. A. Menendez (2018). "Metformin directly targets the H3K27me3 demethylase KDM6A/UTX." Aging Cell 17(4): e12772.
Frolikova, M., P. Manaskova-Postlerova, J. Cerny, J. Jankovicova, O. Simonik, A. Pohlova, P. Secova, J. Antalikova and K. Dvorakova-Hortova (2018). "CD9 and CD81 Interactions and Their Structural Modelling in Sperm Prior to Fertilization." Int J Mol Sci 19(4).
Frydlova, J., D. W. Rogalsky, J. Truksa, L. Traeger, A. U. Steinbicker, M. Vokurka and J. Krijt (2018). "Liver HFE protein content is posttranscriptionally decreased in iron-deficient mice and rats." American Journal of Physiology-Gastrointestinal and Liver Physiology 315(4): G560-G568.
Fuertes, G., N. Banterle, K. M. Ruff, A. Chowdhury, R. V. Pappu, D. I. Svergun and E. A. Lemke (2018). "Comment on "Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water"." Science 361(6405).
Hacohen-Kleiman, G., S. Sragovich, G. Karmon, A. Y. L. Gao, I. Grigg, M. Pasmanik-Chor, A. Le, V. Korenkova, R. A. McKinney and I. Gozes (2018). "Activity-dependent neuroprotective protein deficiency models synaptic and developmental phenotypes of autism-like syndrome." J Clin Invest 128(11): 4956-4969.
Hlavnickova, M., M. Kuchar, R. Osicka, L. Vankova, H. Petrokova, M. Maly, J. Cerny, P. Arenberger and P. Maly (2018). "ABD-Derived Protein Blockers of Human IL-17 Receptor A as Non-IgG Alternatives for Modulation of IL-17-Dependent Pro-Inflammatory Axis." Int J Mol Sci 19(10).
Hubackova, S., S. M. Novais, E. Davidova, J. Neuzil and J. Rohlena (2018). "Mitochondria-Driven Elimination of Cancer and Senescent Cells." Biol Chem.
Hubackova, S., E. Davidova, K. Rohlenova, J. Stursa, L. Werner, L. Andera, L. Dong, M. G. Terp, Z. Hodny, H. J. Ditzel, J. Rohlena and J. Neuzil (2018). "Selective elimination of senescent cells by mitochondrial targeting is regulated by ANT2." Cell Death Differ.
Jankovicova, J., K. Michalkova, P. Secova, L. Horovska, P. Manaskova-Postlerova and J. Antalikova (2018). "Evaluation of protein phosphorylation in bull sperm during their maturation in the epididymis." Cell Tissue Res 371(2): 365-373.
Kerns, K., M. Zigo, E. Z. Drobnis, M. Sutovsky and P. Sutovsky (2018). "Zinc ion flux during mammalian sperm capacitation." Nature Communications 9(1): 2061.
Kersigo, J., N. Pan, J. D. Lederman, S. Chatterjee, T. Abel, G. Pavlinkova, I. Silos-Santiago and B. Fritzsch (2018). "A RNAscope whole mount approach that can be combined with immunofluorescence to quantify differential distribution of mRNA." Cell Tissue Res 374(2): 251-262.
Kovaľ, T. and J. Dohnálek (2018). "Characteristics and application of S1-P1 nucleases in biotechnology and medicine." Biotechnology Advances 36(3): 603-612.
Kral, J., V. Korenkova, V. Novosadova, L. Langerova, M. Schneiderova, V. Liska, M. Levy, V. Veskrnova, J. Spicak, A. Opattova, K. Jiraskova, V. Vymetalkova, P. Vodicka and J. Slyskova (2018). "Expression profile of miR-17/92 cluster is predictive of treatment response in rectal cancer." Carcinogenesis 39(11): 1359-1367.
Krejcirova, R., M. Manasova, V. Sommerova, E. Langhamerova, R. Rajmon and P. Manaskova-Postlerova (2018). "G protein-coupled estrogen receptor (GPER) in adult boar testes, epididymis and spermatozoa during epididymal maturation." Int J Biol Macromol 116: 113-119.
Kubista, M., J. Dreyer-Lamm and A. Stahlberg (2018). "The secrets of the cell." Molecular Aspects of Medicine 59: 1-4.
Kutil, Z., Z. Novakova, M. Meleshin, J. Mikesova, M. Schutkowski and C. Barinka (2018). "Histone Deacetylase 11 Is a Fatty-Acid Deacylase." ACS Chem Biol 13(3): 685-693.
Lettlova, S., V. Brynychova, J. Blecha, D. Vrana, M. Vondrusova, P. Soucek and J. Truksa (2018). "MiR-301a-3p Suppresses Estrogen Signaling by Directly Inhibiting ESR1 in ERalpha Positive Breast Cancer." Cell Physiol Biochem 46(6): 2601-2615.
Ludecke, A., A. M. Seidel, M. Braun, Z. Lansky and S. Diez (2018). "Diffusive tail anchorage determines velocity and force produced by kinesin-14 between crosslinked microtubules." Nature Communications 9(1): 2214.
Malý, M., T. Skálová, L. Švecová, J. Dohnálek, J. Bláha, O. Vaněk, K. Harlos and P. Kolenko (2018). "Paired refinement: Impact of reintegration and rescaling. ." Sborník Osmé Studentské vědecké konference fyziky pevných látek FJFI ČVUT, 17.- 21. 9. 2018, Sedliště: 8-10.
Nahacka, Z., J. Svadlenka, M. Peterka, M. Ksandrova, S. Benesova, J. Neuzil and L. Andera (2018). "TRAIL induces apoptosis but not necroptosis in colorectal and pancreatic cancer cells preferentially via the TRAIL-R2/DR5 receptor." Biochim Biophys Acta Mol Cell Res 1865(3): 522-531.
Nakajima, R., Z. Novakova, W. Tueckmantel, L. Motlova, C. Barinka and A. P. Kozikowski (2018). "2-Aminoadipic Acid-C(O)-Glutamate Based Prostate-Specific Membrane Antigen Ligands for Potential Use as Theranostics." ACS Med Chem Lett 9(11): 1099-1104.
Nedvedova, I., D. Kolar, J. Neckar, M. Kalous, M. Pravenec, J. Silhavy, V. Korenkova, F. Kolar and J. M. Zurmanova (2018). "Cardioprotective Regimen of Adaptation to Chronic Hypoxia Diversely Alters Myocardial Gene Expression in SHR and SHR-mt(BN) Conplastic Rat Strains." Front Endocrinol (Lausanne) 9: 809.
Palyzova, A., J. Zahradnik, H. Maresova, L. Sokolova, E. Kyslikova, M. Grulich, V. Stepanek, T. Rezanka and P. Kyslik (2018). "Potential of the strain Raoultella sp. KDF8 for removal of analgesics." Folia Microbiol (Praha) 63(3): 273-282.
Pan, J., Y. Lee, G. Cheng, J. Zielonka, Q. Zhang, M. Bajzikova, D. Xiong, S. W. Tsaih, M. Hardy, M. Flister, C. M. Olsen, Y. Wang, O. Vang, J. Neuzil, C. R. Myers, B. Kalyanaraman and M. You (2018). "Mitochondria-Targeted Honokiol Confers a Striking Inhibitory Effect on Lung Cancer via Inhibiting Complex I Activity." iScience 3: 192-207.
Peter, E. K. and J. Cerny (2018). "Enriched Conformational Sampling of DNA and Proteins with a Hybrid Hamiltonian Derived from the Protein Data Bank." Int J Mol Sci 19(11).
Pivonkova, H., Z. Hermanova, D. Kirdajova, T. Awadova, J. Malinsky, L. Valihrach, D. Zucha, M. Kubista, A. Galisova, D. Jirak and M. Anderova (2018). "The Contribution of TRPV4 Channels to Astrocyte Volume Regulation and Brain Edema Formation." Neuroscience 394: 127-143.
Podzimek, T., T. Přerovská, J. Šantrůček, T. Kovaľ, J. Dohnálek, J. Matoušek and P. Lipovová (2018). "N-glycosylation of tomato nuclease TBN1 produced in N. benthamiana and its effect on the enzyme activity." Plant Science 276: 152-161.
Pocherniaieva, K., M. Sidova, M. Havelka, T. Saito, M. Psenicka, R. Sindelka and V. Kaspar (2018). "Comparison of oocyte mRNA localization patterns in sterlet Acipenser ruthenus and African clawed frog Xenopus laevis." J Exp Zool B Mol Dev Evol 330(3): 181-187.
Porter, N. J., S. Shen, C. Barinka, A. P. Kozikowski and D. W. Christianson (2018). "Molecular Basis for the Selective Inhibition of Histone Deacetylase 6 by a Mercaptoacetamide Inhibitor." ACS Med Chem Lett 9(12): 1301-1305.
Ptacek, J., J. Nedvedova, M. Navratil, B. Havlinova, J. Konvalinka and C. Barinka (2018). "The calcium-binding site of human glutamate carboxypeptidase II is critical for dimerization, thermal stability, and enzymatic activity." Protein Sci 27(9): 1575-1584.
Semeradtova, A., M. Stofik, L. Vankova, P. Maly, O. Stanek and J. Maly (2018). "Optical microchips based on high-affinity recombinant protein binders-Human serum albumin detection in urine." Sensors and Actuators B-Chemical 272: 441-447.
Schneider, B., P. Boaeikova, I. Necasova, P. Cech, D. Svozil and J. Cerny (2018). "A DNA structural alphabet provides new insight into DNA flexibility." Acta Crystallogr D Struct Biol 74(Pt 1): 52-64.
Sindelka, R., P. Abaffy, Y. Qu, S. Tomankova, M. Sidova, R. Naraine, M. Kolar, E. Peuchen, L. Sun, N. Dovichi and M. Kubista (2018). "Asymmetric distribution of biomolecules of maternal origin in the Xenopus laevis egg and their impact on the developmental plan." Sci Rep 8(1): 8315.
Skalova, T., J. Blaha, J. Stransky, T. Kova, J. Duskova, Y. G. Zhao, K. Harlos, O. Vanek and J. Dohnalek (2018). "Structure of human natural killer cell receptor NKR-P1 in complex with its ligand LLT1." Acta Crystallographica a-Foundation and Advances 74: E224-E224.
Skerenova, M., V. Mikulova, O. Capoun, D. Svec, K. Kolostova, V. Soukup, H. Honova, T. Hanus and T. Zima (2018). "Gene Expression Analysis of Immunomagnetically Enriched Circulating Tumor Cell Fraction in Castration-Resistant Prostate Cancer." Mol Diagn Ther 22(3): 381-390.
Skrlec, K., P. Zadravec, M. Hlavnickova, M. Kuchar, L. Vankova, H. Petrokova, L. Krizova, J. Cerny, A. Berlec and P. Maly (2018). "p19-Targeting ILP Protein Blockers of IL-23/Th-17 Pro-Inflammatory Axis Displayed on Engineered Bacteria of Food Origin." Int J Mol Sci 19(7).
Stafkova, J., P. Rada, D. Meloni, V. Zarsky, T. Smutna, N. Zimmann, K. Harant, P. Pompach, I. Hrdy and J. Tachezy (2018). "Dynamic secretome of Trichomonas vaginalis: Case study of beta-amylases." Molecular & Cellular Proteomics 17(2): 304-320.
Stahlberg, A. and M. Kubista (2018). "Technical aspects and recommendations for single-cell qPCR." Molecular Aspects of Medicine 59: 28-35.
Svec, D., S. Dolatabadi, C. Thomsen, N. Cordes, M. Shannon, P. Fitzpatrick, G. Landberg, P. Aman and A. Stahlberg (2018). "Identification of inhibitors regulating cell proliferation and FUS-DDIT3 expression in myxoid liposarcoma using combined DNA, mRNA, and protein analyses." Lab Invest 98(7): 957-967.
Švecová, L., T. Skálová, T. Kovaľ, L. H. Østergaard, P. Kolenko, M. Malý and J. Dohnálek (2018). "Thermal stability of FAD-dependent oxidoreductase CtAO from
thermophilic fungus Chaetomium thermophilum." Sborník Osmé Studentské vědecké konference fyziky pevných látek FJFI ČVUT, 17.- 21. 9. 2018, Sedliště: 5-7.
Tishchenko, G., P. Morganti, M. Stoller, I. Kelnar, J. Mikešová, J. Kovářová, J. Hašek, R. Kužel, M. Netopilík, L. Kaprálková, M. Špírková, E. Pavlová, E. Chanová, L. Brožová, M. Pekárek, L. Kobera, Z. Sedláková and D. Kubies (2018). "Chitin Nanofibrils-Chitosan CompositeFilms: Characterization and Properties." Bionanotechnology to Save the Environment. Plant and Fishery’s Biomass as Alternative to Petrol;
Pierfrancesco Morganti, Ed.; MDPI: Basel, Switzerland, 2018; Page Range. ISBN 978-3-03842-692-9: 191-226.
Tomasetti, M., M. Re, F. Monaco, S. Gaetani, C. Rubini, A. Bertini, E. Pasquini, C. Bersaglieri, M. Bracci, S. Staffolani, M. Colomba, A. Gregorini, M. Valentino, A. Tagliabracci, M. Bovenzi, J. Neuzil, M. Amati and L. Santarelli (2018). "MiR-126 in intestinal-type sinonasal adenocarcinomas: exosomal transfer of MiR-126 promotes anti-tumour responses." BMC Cancer 18(1): 896.
Valihrach, L., P. Androvic and M. Kubista (2018). "Platforms for Single-Cell Collection and Analysis." International Journal of Molecular Sciences 19(3).
Valny, M., P. Honsa, E. Waloschkova, H. Matuskova, J. Kriska, D. Kirdajova, P. Androvic, L. Valihrach, M. Kubista and M. Anderova (2018). "A single-cell analysis reveals multiple roles of oligodendroglial lineage cells during post-ischemic regeneration." Glia 66(5): 1068-1081.
Zahradnik, J., L. Kolarova, H. Parizkova, P. Kolenko and B. Schneider (2018). "Interferons type II and their receptors R1 and R2 in fish species: Evolution, structure, and function." Fish Shellfish Immunol 79: 140-152.
Zahradnik, J., P. Kolenko, A. Palyzova, J. Cerny, L. Kolarova, E. Kyslikova, H. Maresova, M. Grulich, J. Nunvar, M. Sulc, P. Kyslik and B. Schneider (2018). "The crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN-free form." Plos One 13(4): e0195299.
Zahradnik, J., J. Nunvar, H. Parizkova, L. Kolarova, A. Palyzova, H. Maresova, M. Grulich, E. Kyslikova and P. Kyslik (2018). "Agrobacterium bohemicum sp. nov. isolated from poppy seed wastes in central Bohemia." Syst Appl Microbiol 41(3): 184-190.
Zigo, M., K. Kerns, M. Sutovsky and P. Sutovsky (2018). "Modifications of the 26S proteasome during boar sperm capacitation." Cell Tissue Res 372(3): 591-601.

2017

Aaltonen, K. E., V. Novosadova, P. O. Bendahl, C. Graffman, A. M. Larsson and L. Ryden (2017). "Molecular characterization of circulating tumor cells from patients with metastatic breast cancer reflects evolutionary changes in gene expression under the pressure of systemic therapy." Oncotarget 8(28): 45544-45565.
Androvic, P., L. Valihrach, J. Elling, R. Sjoback and M. Kubista (2017). "Two-tailed RT-qPCR: a novel method for highly accurate miRNA quantification." Nucleic Acids Research 45(15).
Berridge, M. V. and J. Neuzil (2017). "The mobility of mitochondria: Intercellular trafficking in health and disease." Clin Exp Pharmacol Physiol 44 Suppl 1: 15-20.
Bezawork-Geleta, A., J. Rohlena, L. Dong, K. Pacak and J. Neuzil (2017). "Mitochondrial Complex II: At the Crossroads." Trends Biochem Sci 42(4): 312-325.
Blecha, J., S. M. Novais, K. Rohlenova, E. Novotna, S. Lettlova, S. Schmitt, H. Zischka, J. Neuzil and J. Rohlena (2017). "Antioxidant defense in quiescent cells determines selectivity of electron transport chain inhibition-induced cell death." Free Radic Biol Med 112: 253-266.
Bohuslavova, R., R. Cerychova, K. Nepomucka and G. Pavlinkova (2017). "Renal injury is accelerated by global hypoxia-inducible factor 1 alpha deficiency in a mouse model of STZ-induced diabetes." BMC Endocr Disord 17(1): 48.
Bohuslavova, R., N. Dodd, I. Macova, T. Chumak, M. Horak, J. Syka, B. Fritzsch and G. Pavlinkova (2017). "Pax2-Islet1 Transgenic Mice Are Hyperactive and Have Altered Cerebellar Foliation." Mol Neurobiol 54(2): 1352-1368.
Braun, M., Z. Lansky, A. Szuba, F. W. Schwarz, A. Mitra, M. Gao, A. Ludecke, P. R. Ten Wolde and S. Diez (2017). "Changes in microtubule overlap length regulate kinesin-14-driven microtubule sliding." Nat Chem Biol 13(12): 1245-1252.
Bredemeier, M., P. Edimiris, P. Mach, M. Kubista, R. Sjoback, E. Rohlova, K. Kolostova, S. Hauch, B. Aktas, M. Tewes, R. Kimmig and S. Kasimir-Bauer (2017). "Gene Expression Signatures in Circulating Tumor Cells Correlate with Response to Therapy in Metastatic Breast Cancer." Clinical Chemistry 63(10): 1585-1593.
Cerny, J., B. Schneider and L. Biedermannova (2017). "WatAA: Atlas of Protein Hydration. Exploring synergies between data mining and ab initio calculations." Phys Chem Chem Phys 19(26): 17094-17102.
Dohnalek, J., L. Ostergaard, P. Lipovova, M. Trundova, K. Fejfarova, J. Duskova, L. Svecova, T. Skalova, J. Stransky and T. Koval (2017). "Substrate recognition by non-specific zinc-dependent 3 '-nucleases." Acta Crystallographica a-Foundation and Advances 73: C453-C453.
Dong, L. F., J. Kovarova, M. Bajzikova, A. Bezawork-Geleta, D. Svec, B. Endaya, K. Sachaphibulkij, A. R. Coelho, N. Sebkova, A. Ruzickova, A. S. Tan, K. Kluckova, K. Judasova, K. Zamecnikova, Z. Rychtarcikova, V. Gopalan, L. Andera, M. Sobol, B. Yan, B. Pattnaik, N. Bhatraju, J. Truksa, P. Stopka, P. Hozak, A. K. Lam, R. Sedlacek, P. J. Oliveira, M. Kubista, A. Agrawal, K. Dvorakova-Hortova, J. Rohlena, M. V. Berridge and J. Neuzil (2017). "Horizontal transfer of whole mitochondria restores tumorigenic potential in mitochondrial DNA-deficient cancer cells." Elife 6.
Dostalova, P., E. Zatecka and K. Dvorakova-Hortova (2017). "Of Oestrogens and Sperm: A Review of the Roles of Oestrogens and Oestrogen Receptors in Male Reproduction." Int J Mol Sci 18(5).
Drab, T., S. Ren, P. Manaskova-Postlerova, M. Ticha, V. Jonakova and J. Liberda (2017). "Glycosidases in porcine follicular fluid and their effect on zona pellucida-AWN 1 spermadhesin interaction." Theriogenology 100: 80-87.
Forootan, A., R. Sjoback, J. Bjorkman, B. Sjogreen, L. Linz and M. Kubista (2017). "Methods to determine limit of detection and limit of quantification in quantitative real-time PCR (qPCR)." Biomol Detect Quantif 12: 1-6.
Frydlova, J., Z. Rychtarcikova, I. Gurieva, M. Vokurka, J. Truksa and J. Krijt (2017). "Effect of erythropoietin administration on proteins participating in iron homeostasis in Tmprss6-mutated mask mice." Plos One 12(10): e0186844.
Grimolizzi, F., F. Monaco, F. Leoni, M. Bracci, S. Staffolani, C. Bersaglieri, S. Gaetani, M. Valentino, M. Amati, C. Rubini, F. Saccucci, J. Neuzil, M. Tomasetti and L. Santarelli (2017). "Exosomal miR-126 as a circulating biomarker in non-small-cell lung cancer regulating cancer progression." Sci Rep 7(1): 15277.
Gurieva, I., J. Frydlova, Z. Rychtarcikova, M. Vokurka, J. Truksa and J. Krijt (2017). "Erythropoietin administration increases splenic erythroferrone protein content and liver TMPRSS6 protein content in rats." Blood Cells Mol Dis 64: 1-7.
Hanoteau, A., C. Henin, D. Svec, C. Bisilliat Donnet, S. Denanglaire, D. Colau, P. Romero, O. Leo, B. Van den Eynde and M. Moser (2017). "Cyclophosphamide treatment regulates the balance of functional/exhausted tumor-specific CD8(+) T cells." Oncoimmunology 6(8): e1318234.
Havelka, D., M. A. Deriu, M. Cifra and O. Kucera (2017). "Deformation pattern in vibrating microtubule: Structural mechanics study based on an atomistic approach." Sci Rep 7(1): 4227.
Hernandez-Vega, A., M. Braun, L. Scharrel, M. Jahnel, S. Wegmann, B. T. Hyman, S. Alberti, S. Diez and A. A. Hyman (2017). "Local Nucleation of Microtubule Bundles through Tubulin Concentration into a Condensed Tau Phase." Cell Rep 20(10): 2304-2312.
Hillreiner, M., C. Schmautz, I. Ballweg, V. Korenkova, M. W. Pfaffl and H. Kliem (2017). "Gene expression profiling in pbMEC - in search of molecular biomarkers to predict immunoglobulin production in bovine milk." BMC Vet Res 13(1): 369.
Kopka, K., M. Benesova, C. Barinka, U. Haberkorn and J. Babich (2017). "Glu-Ureido-Based Inhibitors of Prostate-Specific Membrane Antigen: Lessons Learned During the Development of a Novel Class of Low-Molecular-Weight Theranostic Radiotracers." J Nucl Med 58(Suppl 2): 17S-26S.
Kralova, J., M. Kolar, M. Kahle, J. Truksa, S. Lettlova, K. Balusikova and P. Bartunek (2017). "Glycol porphyrin derivatives and temoporfin elicit resistance to photodynamic therapy by different mechanisms." Sci Rep 7: 44497.
Krizova, L., M. Kuchar, H. Petrokova, R. Osicka, M. Hlavnickova, O. Pelak, J. Cerny, T. Kalina and P. Maly (2017). "p19-targeted ABD-derived protein variants inhibit IL-23 binding and exert suppressive control over IL-23-stimulated expansion of primary human IL-17+ T-cells." Autoimmunity 50(2): 102-113.
Lv, W., G. Zhang, C. Barinka, J. H. Eubanks and A. P. Kozikowski (2017). "Design and Synthesis of Mercaptoacetamides as Potent, Selective, and Brain Permeable Histone Deacetylase 6 Inhibitors." ACS Med Chem Lett 8(5): 510-515.
Malý, M., J. Dušková, L. H. Østergaard, J. Stránský, L. Švecová, P. Kolenko and J. Dohnálek (2017). "Difrakční limit v makromolekulární krystalografii. ." Sborník Sedmé Studentské vědecké konference fyziky pevných látek FJFI ČVUT, 18.- 22. 9. 2017, Sedliště: 50-52.
Novakova, Z., C. A. Foss, B. T. Copeland, V. Morath, P. Baranova, B. Havlinova, A. Skerra, M. G. Pomper and C. Barinka (2017). "Novel Monoclonal Antibodies Recognizing Human Prostate-Specific Membrane Antigen (PSMA) as Research and Theranostic Tools." Prostate 77(7): 749-764.
Pavlinkova, G., H. Margaryan, E. Zatecka, E. Valaskova, F. Elzeinova, A. Kubatova, R. Bohuslavova and J. Peknicova (2017). "Transgenerational inheritance of susceptibility to diabetes-induced male subfertility." Sci Rep 7(1): 4940.
Rais, R., J. Vavra, T. Tichy, R. P. Dash, A. J. Gadiano, L. Tenora, L. Monincova, C. Barinka, J. Alt, S. C. Zimmermann, C. E. Slusher, Y. Wu, K. Wozniak, P. Majer, T. Tsukamoto and B. S. Slusher (2017). "Discovery of a para-Acetoxy-benzyl Ester Prodrug of a Hydroxamate-Based Glutamate Carboxypeptidase II Inhibitor as Oral Therapy for Neuropathic Pain." J Med Chem 60(18): 7799-7809.
Rohlenova, K., K. Sachaphibulkij, J. Stursa, A. Bezawork-Geleta, J. Blecha, B. Endaya, L. Werner, J. Cerny, R. Zobalova, J. Goodwin, T. Spacek, E. Alizadeh Pesdar, B. Yan, M. N. Nguyen, M. Vondrusova, M. Sobol, P. Jezek, P. Hozak, J. Truksa, J. Rohlena, L. F. Dong and J. Neuzil (2017). "Selective Disruption of Respiratory Supercomplexes as a New Strategy to Suppress Her2(high) Breast Cancer." Antioxid Redox Signal 26(2): 84-103.
Rychtarcikova, Z., S. Lettlova, V. Tomkova, V. Korenkova, L. Langerova, E. Simonova, P. Zjablovskaja, M. Alberich-Jorda, J. Neuzil and J. Truksa (2017). "Tumor-initiating cells of breast and prostate origin show alterations in the expression of genes related to iron metabolism." Oncotarget 8(4): 6376-6398.
Schneider, B., P. Bozikova, P. Cech, D. Svozil and J. Cerny (2017). "A DNA Structural Alphabet Distinguishes Structural Features of DNA Bound to Regulatory Proteins and in the Nucleosome Core Particle." Genes (Basel) 8(10).
Sindelka, R., M. Sidova, P. Abaffy and M. Kubista (2017). "Asymmetric Localization and Distribution of Factors Determining Cell Fate During Early Development of Xenopus laevis." Results Probl Cell Differ 61: 229-241.
Skultetyova, L., K. Ustinova, Z. Kutil, Z. Novakova, J. Pavlicek, J. Mikesova, D. Trapl, P. Baranova, B. Havlinova, M. Hubalek, Z. Lansky and C. Barinka (2017). "Human histone deacetylase 6 shows strong preference for tubulin dimers over assembled microtubules." Sci Rep 7(1): 11547.
Stranava, M., P. Man, T. Skálová, P. Kolenko, J. Bláha, V. Fojtíková, V. Martínek, J. Dohnálek, A. Lengalová, M. Rosůlek, T. Shimizu and M. Martínková (2017). "Coordination and redox state-dependent structural changes of the heme-based oxygen sensor AfGcHK associated with intraprotein signal transduction." Journal of Biological Chemistry 292(51): 20921-20935.
Šindelka, R., Šídová, M., Abaffy, P., Kubista, M. (2017). Asymmetric Localization and Distribution of Factors Determining Cell Fate During Early Development of Xenopus laevis. Asymmetric Cell Division in Development, Differentiation and Cancer. J. Tassan, Kubiak, J., Springer International Publishing AG. 61: 229-241.
Švecová, L., T. Koval, T. Skálová, L. H. Østergaard and J. Dohnálek (2017). "Spektroskopické studie bilirubin oxidázy a jejího mutantu. ." Sborník Sedmé Studentské vědecké konference fyziky pevných látek FJFI ČVUT, 18.- 22. 9. 2017, Sedliště: 47-49.
Tavares, M. T., S. Shen, T. Knox, M. Hadley, Z. Kutil, C. Barinka, A. Villagra and A. P. Kozikowski (2017). "Synthesis and Pharmacological Evaluation of Selective Histone Deacetylase 6 Inhibitors in Melanoma Models." ACS Med Chem Lett 8(10): 1031-1036.
Tomankova, S., P. Abaffy and R. Sindelka (2017). "The role of nitric oxide during embryonic epidermis development of Xenopus laevis." Biol Open 6(6): 862-871.
Tomasetti, M., W. Lee, L. Santarelli and J. Neuzil (2017). "Exosome-derived microRNAs in cancer metabolism: possible implications in cancer diagnostics and therapy." Exp Mol Med 49(1): e285.
Tomasetti, M., M. Amati, J. Neuzil and L. Santarelli (2017). "Circulating epigenetic biomarkers in lung malignancies: From early diagnosis to therapy." Lung Cancer 107: 65-72.
Traxler, L., P. Rathner, M. Fahrner, M. Stadlbauer, F. Faschinger, T. Charnavets, N. Muller, C. Romanin, P. Hinterdorfer and H. J. Gruber (2017). "Detailed Evidence for an Unparalleled Interaction Mode between Calmodulin and Orai Proteins." Angewandte Chemie-International Edition 56(49): 15755-15759.
Traxler, L., F. Faschinger, P. Rathner, M. Stadlbauer, T. Charnavets, C. Romanin, N. Muller, P. Hinterdorfer and H. J. Gruber (2017). "Characterization of the Orai-Calmodulin Interaction as Potential Mediator of Calcium-Dependent Orai-Channel Inactivation." Biophysical Journal 112(3): 183a-184a.
Valis, K., V. Grobarova, L. Hernychova, M. Buganova, D. Kavan, M. Kalous, J. Cerny, E. Stodulkova, M. Kuzma, M. Flieger, J. Cerny and P. Novak (2017). "Reprogramming of leukemic cell metabolism through the naphthoquinonic compound Quambalarine B." Oncotarget 8(61): 103137-103153.

2016

Biedermannova, L. and B. Schneider (2016). "Hydration of proteins and nucleic acids: Advances in experiment and theory. A review." Biochim Biophys Acta 1860(9): 1821-1835.
Bjorkman, J., D. Svec, E. Lott, M. Kubista and R. Sjoback (2016). "Differential amplicons (DeltaAmp)-a new molecular method to assess RNA integrity." Biomol Detect Quantif 6: 4-12.
Bosakova, Z., A. Tockstein, H. Adamusova, P. Coufal, N. Sebkova and K. Dvorakova-Hortova (2016). "Kinetic analysis of decreased sperm fertilizing ability by fluorides and fluoroaluminates: a tool for analyzing the effect of environmental substances on biological events." Eur Biophys J 45(1): 71-79.
Boukalova, S., J. Stursa, L. Werner, Z. Ezrova, J. Cerny, A. Bezawork-Geleta, A. Pecinova, L. Dong, Z. Drahota and J. Neuzil (2016). "Mitochondrial Targeting of Metformin Enhances Its Activity against Pancreatic Cancer." Mol Cancer Ther 15(12): 2875-2886.
Braun, M., S. Diez and Z. Lansky (2016). "Cell Biology: Kinesin-14 Backsteps to Organize Polymerizing Microtubules." Curr Biol 26(24): R1292-R1294.
Braun, M., Z. Lansky, F. Hilitski, Z. Dogic and S. Diez (2016). "Entropic forces drive contraction of cytoskeletal networks." Bioessays 38(5): 474-481.
Bumba, L., J. Masin, P. Macek, T. Wald, L. Motlova, I. Bibova, N. Klimova, L. Bednarova, V. Veverka, M. Kachala, D. I. Svergun, C. Barinka and P. Sebo (2016). "Calcium-Driven Folding of RTX Domain beta-Rolls Ratchets Translocation of RTX Proteins through Type I Secretion Ducts." Mol Cell 62(1): 47-62.
Capkova, J., A. Kubatova, L. Ded, O. Tepla and J. Peknicova (2016). "Evaluation of the expression of sperm proteins in normozoospermic and asthenozoospermic men using monoclonal antibodies." Asian J Androl 18(1): 108-113.
Cerny, J., P. Bozikova and B. Schneider (2016). "DNATCO: assignment of DNA conformers at dnatco.org." Nucleic Acids Research 44(W1): W284-287.
Conrad, S., H. Azizi, M. Hatami, M. Kubista, M. Bonin, J. Hennenlotter, K. D. Sievert and T. Skutella (2016). "Expression of Genes Related to Germ Cell Lineage and Pluripotency in Single Cells and Colonies of Human Adult Germ Stem Cells." Stem Cells International.
Conway, R. E., C. Rojas, J. Alt, Z. Novakova, S. M. Richardson, T. C. Rodrick, J. L. Fuentes, N. H. Richardson, J. Attalla, S. Stewart, B. Fahmy, C. Barinka, M. Ghosh, L. H. Shapiro and B. S. Slusher (2016). "Prostate-specific membrane antigen (PSMA)-mediated laminin proteolysis generates a pro-angiogenic peptide." Angiogenesis 19(4): 487-500.
Dannoon, S., T. Ganguly, H. Cahaya, J. J. Geruntho, M. S. Galliher, S. K. Beyer, C. J. Choy, M. R. Hopkins, M. Regan, J. E. Blecha, L. Skultetyova, C. R. Drake, S. Jivan, C. Barinka, E. F. Jones, C. E. Berkman and H. F. VanBrocklin (2016). "Structure-Activity Relationship of (18)F-Labeled Phosphoramidate Peptidomimetic Prostate-Specific Membrane Antigen (PSMA)-Targeted Inhibitor Analogues for PET Imaging of Prostate Cancer." J Med Chem 59(12): 5684-5694.
Dohnalek, J., T. Koval, L. H. Ostergaard, P. Lipovova, J. Duskova, T. Skalova, M. Trundova, K. Fejfarova and J. Stransky (2016). "Zinc dependent 3'-nucleases/nucleotidases from plants, fungi and bacteria - varied roles and specificity." Acta Crystallographica a-Foundation and Advances 72: S54-S54.
Dohnálek, J., McAuley, K. E., Brzozowski, A. M., Ostergaard, P. R., Svendsen, A., Wilson, K. S. (2016). Stabilization of enzymes by metal binding: structures of two alkalophilic Bacillus subtilases and analysis of the second metal-binding site of the subtilase family. Understanding Enzymes: Function, Design, Engineering and Analysis. A. Svendsen. Singapore, Pan Stanford Publishing Pte. Ltd.: 203-265.
Dvorakova, M., I. Jahan, I. Macova, T. Chumak, R. Bohuslavova, J. Syka, B. Fritzsch and G. Pavlinkova (2016). "Incomplete and delayed Sox2 deletion defines residual ear neurosensory development and maintenance." Sci Rep 6: 38253.
Dzamba, D., L. Valihrach, M. Kubista and M. Anderova (2016). "The correlation between expression profiles measured in single cells and in traditional bulk samples." Scientific Reports 6.
Endaya, B., B. Cavanagh, F. Alowaidi, T. Walker, N. de Pennington, J. M. Ng, P. Y. Lam, A. Mackay-Sim, J. Neuzil and A. C. Meedeniya (2016). "Isolating dividing neural and brain tumour cells for gene expression profiling." J Neurosci Methods 257: 121-133.
Endaya, B. B., P. Y. Lam, A. C. Meedeniya and J. Neuzil (2016). "Transcriptional profiling of dividing tumor cells detects intratumor heterogeneity linked to cell proliferation in a brain tumor model." Mol Oncol 10(1): 126-137.
Fejfarová, K., A. Kádek, H. Mrázek, J. Hausner, V. Tretyachenko, T. Kovaľ, P. Man, J. Hašek and J. Dohnálek (2016). "Crystallization of nepenthesin I using a low-pH crystallization screen." Acta Crystallographica Section F-Structural Biology Communications 72: 24-28.
Frolikova, M., N. Sebkova, L. Ded and K. Dvorakova-Hortova (2016). "Characterization of CD46 and beta1 integrin dynamics during sperm acrosome reaction." Sci Rep 6: 33714.
Frydlova, J., P. Prikryl, J. Truksa, L. L. Falke, X. Du, I. Gurieva, M. Vokurka and J. Krijt (2016). "Effect of Erythropoietin, Iron Deficiency and Iron Overload on Liver Matriptase-2 (TMPRSS6) Protein Content in Mice and Rats." Plos One 11(2): e0148540.
Gorges, T. M., A. Kuske, K. Rock, O. Mauermann, V. Muller, S. Peine, K. Verpoort, V. Novosadova, M. Kubista, S. Riethdorf and K. Pantel (2016). "Accession of Tumor Heterogeneity by Multiplex Transcriptome Profiling of Single Circulating Tumor Cells." Clinical Chemistry 62(11): 1504-1515.
Hensler, M., I. Vancurova, E. Becht, O. Palata, P. Strnad, P. Tesarova, M. Cabinakova, D. Svec, M. Kubista, J. Bartunkova, R. Spisek and L. Sojka (2016). "Gene expression profiling of circulating tumor cells and peripheral blood mononuclear cells from breast cancer patients." Oncoimmunology 5(4).
Honsa, P., M. Valny, J. Kriska, H. Matuskova, L. Harantova, D. Kirdajova, L. Valihrach, P. Androvic, M. Kubista and M. Anderova (2016). "Generation of Reactive Astrocytes from NG2 Cells is Regulated by Sonic Hedgehog." Glia 64(9): 1518-1531.
Chumak, T., R. Bohuslavova, I. Macova, N. Dodd, D. Buckiova, B. Fritzsch, J. Syka and G. Pavlinkova (2016). "Deterioration of the Medial Olivocochlear Efferent System Accelerates Age-Related Hearing Loss in Pax2-Isl1 Transgenic Mice." Mol Neurobiol 53(4): 2368-2383.
Jankovicova, J., M. Frolikova, N. Sebkova, M. Simon, P. Cupperova, D. Lipcseyova, K. Michalkova, L. Horovska, R. Sedlacek, P. Stopka, J. Antalikova and K. Dvorakova-Hortova (2016). "Characterization of tetraspanin protein CD81 in mouse spermatozoa and bovine gametes." Reproduction 152(6): 785-793.
Jirku, M., Z. Lansky, L. Bednarova, M. Sulc, L. Monincova, P. Majer, L. Vyklicky, J. Vondrasek, J. Teisinger and K. Bousova (2016). "The characterization of a novel S100A1 binding site in the N-terminus of TRPM1." Int J Biochem Cell Biol 78: 186-193.
Korenkova, V., J. Slyskova, V. Novosadova, S. Pizzamiglio, L. Langerova, J. Bjorkman, O. Vycital, V. Liska, M. Levy, K. Veskrna, P. Vodicka, L. Vodickova, M. Kubista and P. Verderio (2016). "The focus on sample quality: Influence of colon tissue collection on reliability of qPCR data." Scientific Reports 6.
Koval, T., L. H. Ostergaard, J. Lehmbeck, A. Norgaard, P. Lipovova, J. Duskova, T. Skalova, M. Trundova, P. Kolenko, K. Fejfarova, J. Stransky, L. Svecova, J. Hasek and J. Dohnalek (2016). "Structural and Catalytic Properties of S1 Nuclease from Aspergillus oryzae Responsible for Substrate Recognition, Cleavage, Non-Specificity, and Inhibition." Plos One 11(12): 25.
Maly, J., O. Stanek, J. Frolik, M. Maly, F. Ennen, D. Appelhans, A. Semeradtova, D. Wrobel, M. Stofik, T. Knapova, M. Kuchar, L. C. Stastna, J. Cermak, P. Sebo and P. Maly (2016). "Biocompatible Size-Defined Dendrimer-Albumin Binding Protein Hybrid Materials as a Versatile Platform for Biomedical Applications." Macromol Biosci 16(4): 553-566.
Malý, M., J. Dušková, Ø. L. H, J. Stránský, L. Švecová, P. Kolenko and J. Dohnálek (2016). "Optimalizace parametrů zpracování difrakčních dat oxidázy z Microdochium nivale." Sborník Šesté Studentské vědecké konference fyziky pevných látek FJFI ČVUT, 27.6 - 1. 7. 2016, Sedliště: 5-9.
Manaskova-Postlerova, P., N. Cozlova, A. Dorosh, M. Sulc, B. Guyonnet and V. Jonakova (2016). "Acrosin inhibitor detection along the boar epididymis." Int J Biol Macromol 82: 733-739.
Mikulecky, P., J. Zahradnik, P. Kolenko, J. Cerny, T. Charnavets, L. Kolarova, I. Necasova, P. N. Pham and B. Schneider (2016). "Crystal structure of human interferon-gamma receptor 2 reveals the structural basis for receptor specificity." Acta Crystallogr D Struct Biol 72(Pt 9): 1017-1025.
Moudra, A., S. Hubackova, V. Machalova, M. Vancurova, J. Bartek, M. Reinis, Z. Hodny and A. Jonasova (2016). "Dynamic alterations of bone marrow cytokine landscape of myelodysplastic syndromes patients treated with 5-azacytidine." Oncoimmunology 5(10): e1183860.
Novakova, Z., K. Wozniak, A. Jancarik, R. Rais, Y. Wu, J. Pavlicek, D. Ferraris, B. Havlinova, J. Ptacek, J. Vavra, N. Hin, C. Rojas, P. Majer, B. S. Slusher, T. Tsukamoto and C. Barinka (2016). "Unprecedented Binding Mode of Hydroxamate-Based Inhibitors of Glutamate Carboxypeptidase II: Structural Characterization and Biological Activity." J Med Chem 59(10): 4539-4550.
Novakova, Z., J. Cerny, C. J. Choy, J. R. Nedrow, J. K. Choi, J. Lubkowski, C. E. Berkman and C. Barinka (2016). "Design of composite inhibitors targeting glutamate carboxypeptidase II: the importance of effector functionalities." FEBS J 283(1): 130-143.
Pěknicová, J., Ulčová-Gallová, Z., Madar, J. (2016). Imunologie a imunopatologie mužského pohlavního systému. [Immunology and immunopathology of the male reproductive system.]. Imunologie a imunopatologie lidské reprodukce. Praha, Mladá fronta: 22-29.
Pěknicová, J., Ulčová-Gallová, Z., Madar, J. (2016). Imunologie oplození. [Immunology of fertilization.]. Imunologie a imunopatologie lidské reprodukce. Praha, Mladá fronta. 5: 39-51.
Rohlenova, K., J. Neuzil and J. Rohlena (2016). "The role of Her2 and other oncogenes of the PI3K/AKT pathway in mitochondria." Biol Chem 397(7): 607-615.
Skalova, T., J. Blaha, K. Harlos, J. Duskova, T. Koval, J. Stransky, J. Hasek, O. Vanek and J. Dohnalek (2016). "Changes of LLT1, a ligand for human NKR-P1, with varied glycosylation and crystallization conditions." Acta Crystallographica a-Foundation and Advances 72: S340-S340.
Stránský, J., L. Švecová, P. Kolenko and J. Dohnálek (2016). "Analýza vlivu expozice na difrakční data a model struktury proteinu." Sborník Šesté Studentské vědecké konference fyziky pevných látek FJFI ČVUT, 27.6 - 1. 7. 2016, Sedliště: 10-15.
Taherkhani, M., A. Armentano, J. Černý and K. Müller-Dethlefs (2016). "Threshold ionization spectroscopic investigation of supersonic jet-cooled, laser-desorbed Tryptophan." Chemical Physics Letters 657: 142-147.
Tlapakova, T., T. M. Nguyen, M. Vegrichtova, M. Sidova, K. Strnadova, M. Blahova and V. Krylov (2016). "Identification and characterization of Xenopus tropicalis common progenitors of Sertoli and peritubular myoid cell lineages." Biol Open 5(9): 1275-1282.
Tomasetti, M., M. Amati, L. Santarelli and J. Neuzil (2016). "MicroRNA in Metabolic Re-Programming and Their Role in Tumorigenesis." Int J Mol Sci 17(5).
Tomasetti, M., F. Monaco, N. Manzella, J. Rohlena, K. Rohlenova, S. Staffolani, S. Gaetani, V. Ciarapica, M. Amati, M. Bracci, M. Valentino, J. Goodwin, M. Nguyen, J. Truksa, M. Sobol, P. Hozak, L. F. Dong, L. Santarelli and J. Neuzil (2016). "MicroRNA-126 induces autophagy by altering cell metabolism in malignant mesothelioma." Oncotarget 7(24): 36338-36352.
Vanova, K., S. Boukalova, H. Gbelcova, L. Muchova, J. Neuzil, R. Gurlich, T. Ruml and L. Vitek (2016). "Heme oxygenase is not involved in the anti-proliferative effects of statins on pancreatic cancer cells." BMC Cancer 16: 309.
Virant-Klun, I., A. Stahlberg, M. Kubista and T. Skutella (2016). "MicroRNAs: From Female Fertility, Germ Cells, and Stem Cells to Cancer in Humans." Stem Cells International.
Yan, B., L. Dong and J. Neuzil (2016). "Mitochondria: An intriguing target for killing tumour-initiating cells." Mitochondrion 26: 86-93.
Zadravec, P., L. Mareckova, H. Petrokova, V. Hodnik, M. P. Nanut, G. Anderluh, B. Strukelj, P. Maly and A. Berlec (2016). "Development of Recombinant Lactococcus lactis Displaying Albumin-Binding Domain Variants against Shiga Toxin 1 B Subunit." Plos One 11(9).
Agirre, J., A. Ariza, W. A. Offen, J. P. Turkenburg, S. M. Roberts, S. McNicholas, P. V. Harris, B. McBrayer, J. Dohnálek, K. D. Cowtan, G. J. Davies and K. S. Wilson (2016). "Three-dimensional structures of two heavily N-glycosylated Aspergillus sp. family GH3 beta-D-glucosidases." Acta crystallographica. Section D, Structural biology 72(Pt 2): 254-265.
Aman, P., S. Dolatabadi, D. Svec, E. Jonasson, S. Safavi, D. Andersson, P. Grundevik, C. Thomsen and A. Stahlberg (2016). "Regulatory mechanisms, expression levels and proliferation effects of the FUS-DDIT3 fusion oncogene in liposarcoma." J Pathol 238(5): 689-699.
Barinka, C., J. Ptacek, A. Richter, Z. Novakova, V. Morath and A. Skerra (2016). "Selection and characterization of Anticalins targeting human prostate-specific membrane antigen (PSMA)." Protein Eng Des Sel 29(3): 105-115.
Berridge, M. V., M. J. McConnell, C. Grasso, M. Bajzikova, J. Kovarova and J. Neuzil (2016). "Horizontal transfer of mitochondria between mammalian cells: beyond co-culture approaches." Curr Opin Genet Dev 38: 75-82.
Bezawork-Geleta, A., L. Dong, J. Rohlena and J. Neuzil (2016). "The Assembly Factor SDHAF2 Is Dispensable for Flavination of the Catalytic Subunit of Mitochondrial Complex II in Breast Cancer Cells." J Biol Chem 291(41): 21414-21420.

2015

Andersson, D., N. Akrap, D. Svec, T. E. Godfrey, M. Kubista, G. Landberg and A. Stahlberg (2015). "Properties of targeted preamplification in DNA and cDNA quantification." Expert Review of Molecular Diagnostics 15(8): 1085-1100.
Berridge, M. V., L. Dong and J. Neuzil (2015). "Mitochondrial DNA in Tumor Initiation, Progression, and Metastasis: Role of Horizontal mtDNA Transfer." Cancer Res 75(16): 3203-3208.
Biedermannova, L. and B. Schneider (2015). "Structure of the ordered hydration of amino acids in proteins: analysis of crystal structures." Acta Crystallogr D Biol Crystallogr 71(Pt 11): 2192-2202.
Bockova, M., T. Springer, I. Necasova, J. Nunvar, B. Schneider and J. Homola (2015). "Monitoring RAYT activity by surface plasmon resonance biosensor." Anal Bioanal Chem 407(14): 3985-3993.
Bohuslavova, R., L. Skvorova, R. Cerychova and G. Pavlinkova (2015). "Gene expression profiling of changes induced by maternal diabetes in the embryonic heart." Reprod Toxicol 57: 147-156.
Brieno-Enriquez, M. A., J. Garcia-Lopez, D. B. Cardenas, S. Guibert, E. Cleroux, L. Ded, D. Hourcade Jde, J. Peknicova, M. Weber and J. Del Mazo (2015). "Exposure to endocrine disruptor induces transgenerational epigenetic deregulation of microRNAs in primordial germ cells." Plos One 10(4): e0124296.
Capkova, J., H. Margaryan, A. Kubatova, P. Novak and J. Peknicova (2015). "Target antigens for Hs-14 monoclonal antibody and their various expression in normozoospermic and asthenozoospermic men." Basic Clin Androl 25: 11.
Cerny, J., L. Biedermannova, P. Mikulecky, J. Zahradnik, T. Charnavets, P. Sebo and B. Schneider (2015). "Redesigning protein cavities as a strategy for increasing affinity in protein-protein interaction: interferon- gamma receptor 1 as a model." Biomed Research International 2015: 716945.
Craveur, P., A. P. Joseph, J. Esque, T. J. Narwani, F. Noel, N. Shinada, M. Goguet, S. Leonard, P. Poulain, O. Bertrand, G. Faure, J. Rebehmed, A. Ghozlane, L. S. Swapna, R. M. Bhaskara, J. Barnoud, S. Teletchea, V. Jallu, J. Cerny, B. Schneider, C. Etchebest, N. Srinivasan, J. C. Gelly and A. G. de Brevern (2015). "Protein flexibility in the light of structural alphabets." Front Mol Biosci 2: 20.
Duhnalek, J., T. Koval, M. Trundova, J. Stransky, K. Fejfarova, P. Kolenko, J. Duskova, T. Skalova and J. Hasek (2015). "Structure-function relationship of zinc-dependent 3'nucleotidases/endonucleases." Acta Crystallographica a-Foundation and Advances 71: S215-S215.
Dzamba, D., P. Honsa, M. Valny, J. Kriska, L. Valihrach, V. Novosadova, M. Kubista and M. Anderova (2015). "Quantitative Analysis of Glutamate Receptors in Glial Cells from the Cortex of GFAP/EGFP Mice Following Ischemic Injury: Focus on NMDA Receptors." Cellular and Molecular Neurobiology 35(8): 1187-1202.
Ganguly, T., S. Dannoon, M. R. Hopkins, S. Murphy, H. Cahaya, J. E. Blecha, S. Jivan, C. R. Drake, C. Barinka, E. F. Jones, H. F. VanBrocklin and C. E. Berkman (2015). "A high-affinity [(18)F]-labeled phosphoramidate peptidomimetic PSMA-targeted inhibitor for PET imaging of prostate cancer." Nucl Med Biol 42(10): 780-787.
Grycova, L., B. Holendova, Z. Lansky, L. Bumba, M. Jirku, K. Bousova and J. Teisinger (2015). "Ca(2+) binding protein S100A1 competes with calmodulin and PIP2 for binding site on the C-terminus of the TPRV1 receptor." ACS Chem Neurosci 6(3): 386-392.
Hasek, J., T. Skalova, P. Kolenko, J. Duskova, T. Koval, K. Fejfarova, J. Stransky and J. Dohnalek (2015). "Protein surface modifying agents in protein crystallization." Acta Crystallographica a-Foundation and Advances 71: S285-S285.
Charnavets, T., J. Nunvar, I. Necasova, J. Volker, K. J. Breslauer and B. Schneider (2015). "Conformational diversity of single-stranded DNA from bacterial repetitive extragenic palindromes: Implications for the DNA recognition elements of transposases." Biopolymers 103(10): 585-596.
Kap, M., A. M. Sieuwerts, M. Kubista, M. Oomen, S. Arshad and P. Riegman (2015). "The Influence of Tissue Procurement Procedures on RNA Integrity, Gene Expression, and Morphology in Porcine and Human Liver Tissue." Biopreservation and Biobanking 13(3): 200-206.
Khera, A., L. F. Dong, O. Holland, J. Vanderlelie, E. A. Pasdar, J. Neuzil and A. V. Perkins (2015). "Selenium supplementation induces mitochondrial biogenesis in trophoblasts." Placenta 36(8): 863-869.
Kluckova, K., L. F. Dong, M. Bajzikova, J. Rohlena and J. Neuzil (2015). "Evaluation of respiration of mitochondria in cancer cells exposed to mitochondria-targeted agents." Methods Mol Biol 1265: 181-194.
Kluckova, K., M. Sticha, J. Cerny, T. Mracek, L. Dong, Z. Drahota, E. Gottlieb, J. Neuzil and J. Rohlena (2015). "Ubiquinone-binding site mutagenesis reveals the role of mitochondrial complex II in cell death initiation." Cell Death Dis 6: e1749.
Korenkova, V., J. Scott, V. Novosadova, M. Jindrichova, L. Langerova, D. Svec, M. Sidova and R. Sjoback (2015). "Pre-amplification in the context of high-throughput qPCR gene expression experiment." BMC Mol Biol 16: 5.
Koudelka, S., P. Turanek Knotigova, J. Masek, L. Prochazka, R. Lukac, A. D. Miller, J. Neuzil and J. Turanek (2015). "Liposomal delivery systems for anti-cancer analogues of vitamin E." J Control Release 207: 59-69.
Kubista, M., R. Sjoback, M. Jindrichova, E. Rohlova, V. Rusnakova, K. Kolostova, S. Hauch, B. Aktas, M. Tewes, M. Bredemeier and S. Kasimir-Bauer (2015). "Expression profiling of circulating tumor cells." International Journal of Molecular Medicine 36: S72-S72.
Mareckova, L., H. Petrokova, R. Osicka, M. Kuchar and P. Maly (2015). "Novel binders derived from an albumin-binding domain scaffold targeting human prostate secretory protein 94 (PSP94)." Protein Cell 6(10): 774-779.
Margaryan, H., A. Dorosh, J. Capkova, P. Manaskova-Postlerova, A. Philimonenko, P. Hozak and J. Peknicova (2015). "Characterization and possible function of glyceraldehyde-3-phosphate dehydrogenase-spermatogenic protein GAPDHS in mammalian sperm." Reprod Biol Endocrinol 13: 15.
Ornoy, A., E. A. Reece, G. Pavlinkova, C. Kappen and R. K. Miller (2015). "Effect of maternal diabetes on the embryo, fetus, and children: congenital anomalies, genetic and epigenetic changes and developmental outcomes." Birth Defects Res C Embryo Today 105(1): 53-72.
Osicka, R., A. Osickova, S. Hasan, L. Bumba, J. Cerny and P. Sebo (2015). "Bordetella adenylate cyclase toxin is a unique ligand of the integrin complement receptor 3." Elife 4: e10766.
Pasdar, E. A., M. Smits, M. Stapelberg, M. Bajzikova, M. Stantic, J. Goodwin, B. Yan, J. Stursa, J. Kovarova, K. Sachaphibulkij, A. Bezawork-Geleta, M. Sobol, A. Filimonenko, M. Tomasetti, R. Zobalova, P. Hozak, L. F. Dong and J. Neuzil (2015). "Characterisation of mesothelioma-initiating cells and their susceptibility to anti-cancer agents." Plos One 10(5): e0119549.
Pekarova, M., A. Koudelka, H. Kolarova, G. Ambrozova, A. Klinke, A. Cerna, J. Kadlec, M. Trundova, L. Sindlerova Svihalkova, R. Kuchta, Z. Kuchtova, A. Lojek and L. Kubala (2015). "Asymmetric dimethyl arginine induces pulmonary vascular dysfunction via activation of signal transducer and activator of transcription 3 and stabilization of hypoxia-inducible factor 1-alpha." Vascular Pharmacology 73: 138-148.
Santarelli, L., S. Staffolani, E. Strafella, L. Nocchi, N. Manzella, P. Grossi, M. Bracci, E. Pignotti, R. Alleva, B. Borghi, C. Pompili, A. Sabbatini, C. Rubini, L. Zuccatosta, E. Bichisecchi, M. Valentino, K. Horwood, M. Comar, M. Bovenzi, L. F. Dong, J. Neuzil, M. Amati and M. Tomasetti (2015). "Combined circulating epigenetic markers to improve mesothelin performance in the diagnosis of malignant mesothelioma." Lung Cancer 90(3): 457-464.
Sidova, M., S. Tomankova, P. Abaffy, M. Kubista and R. Sindelka (2015). "Effects of post-mortem and physical degradation on RNA integrity and quality." Biomol Detect Quantif 5: 3-9.
Sidova, M., R. Sindelka, M. Castoldi, V. Benes and M. Kubista (2015). "Intracellular microRNA profiles form in the Xenopus laevis oocyte that may contribute to asymmetric cell division." Scientific Reports 5.
Skalova, T., J. Blaha, K. Harlos, J. Duskova, T. Koval, J. Stransky, J. Hasek, O. Vanek and J. Dohnalek (2015). "Human LLT1, a ligand for NKR-P1, and its variability under various conditions." Acta Crystallographica a-Foundation and Advances 71: S265-S266.
Skalova, T., J. Blaha, K. Harlos, J. Duskova, T. Koval, J. Stransky, J. Hasek, O. Vanek and J. Dohnalek (2015). "Four crystal structures of human LLT1, a ligand of human NKR-P1, in varied glycosylation and oligomerization states." Acta Crystallographica Section D-Structural Biology 71: 578-591.
Slyskova, J., F. Cordero, B. Pardini, V. Korenkova, V. Vymetalkova, L. Bielik, L. Vodickova, P. Pitule, V. Liska, V. M. Matejka, M. Levy, T. Buchler, M. Kubista, A. Naccarati and P. Vodicka (2015). "Post-Treatment Recovery of Suboptimal DNA Repair Capacity and Gene Expression Levels in Colorectal Cancer Patients." Molecular Carcinogenesis 54(9): 769-778.
Stransky, J., T. Koval, T. Podzimek, A. Tycova, P. Lipovova, J. Matousek, P. Kolenko, K. Fejfarova, J. Duskova, T. Skalova, J. Hasek and J. Dohnalek (2015). "Phosphate binding in the active centre of tomato multifunctional nuclease TBN1 and analysis of superhelix formation by the enzyme." Acta Crystallographica Section F-Structural Biology Communications 71: 1408-1415.
Stránský, J. and J. Dohnálek (2015). "Zanedbávaný parametr difrakcního experimentu: expozicní
cas." Sborník Páté Studentské vědecké konference fyziky pevných látek FJFI ČVUT, 14. - 19. 9. 2015, Byňov
22-27.
Svec, D., A. Tichopad, V. Novosadova, M. W. Pfaffl and M. Kubista (2015). "How good is a PCR efficiency estimate: Recommendations for precise and robust qPCR efficiency assessments." Biomol Detect Quantif 3: 9-16.
Švecová, L., T. Koval, T. Skálová, L. H. Østergaard and J. Dohnálek (2015). "Krystalová struktura Bilirubin oxidázy z Myrothecium verrucaria s ligandem v aktivním místě. ." Sborník Páté Studentské vědecké konference fyziky pevných látek FJFI ČVUT, 14. - 19. 9. 2015, Byňov: 28-32.
Tan, A. S., J. W. Baty, L. F. Dong, A. Bezawork-Geleta, B. Endaya, J. Goodwin, M. Bajzikova, J. Kovarova, M. Peterka, B. Yan, E. A. Pesdar, M. Sobol, A. Filimonenko, S. Stuart, M. Vondrusova, K. Kluckova, K. Sachaphibulkij, J. Rohlena, P. Hozak, J. Truksa, D. Eccles, L. M. Haupt, L. R. Griffiths, J. Neuzil and M. V. Berridge (2015). "Mitochondrial genome acquisition restores respiratory function and tumorigenic potential of cancer cells without mitochondrial DNA." Cell Metabolism 21(1): 81-94.
Tomasetti, M., L. Santarelli, R. Alleva, L. F. Dong and J. Neuzil (2015). "Redox-active and redox-silent compounds: synergistic therapeutics in cancer." Curr Med Chem 22(5): 552-568.
Truksa, J., L. F. Dong, J. Rohlena, J. Stursa, M. Vondrusova, J. Goodwin, M. Nguyen, K. Kluckova, Z. Rychtarcikova, S. Lettlova, J. Spacilova, M. Stapelberg, M. Zoratti and J. Neuzil (2015). "Mitochondrially targeted vitamin E succinate modulates expression of mitochondrial DNA transcripts and mitochondrial biogenesis." Antioxid Redox Signal 22(11): 883-900.
Tykvart, J., C. Barinka, M. Svoboda, V. Navratil, R. Soucek, M. Hubalek, M. Hradilek, P. Sacha, J. Lubkowski and J. Konvalinka (2015). "Structural and biochemical characterization of a novel aminopeptidase from human intestine." J Biol Chem 290(18): 11321-11336.
Vieweg, M., K. Dvorakova-Hortova, B. Dudkova, P. Waliszewski, M. Otte, B. Oels, A. Hajimohammad, H. Turley, M. Schorsch, H. C. Schuppe, W. Weidner, K. Steger and A. Paradowska-Dogan (2015). "Methylation analysis of histone H4K12ac-associated promoters in sperm of healthy donors and subfertile patients." Clin Epigenetics 7: 31.
Vondrusova, M., A. Bezawork-Geleta, K. Sachaphibulkij, J. Truksa and J. Neuzil (2015). "The effect of mitochondrially targeted anticancer agents on mitochondrial (super)complexes." Methods Mol Biol 1265: 195-208.
Yan, B., M. Stantic, R. Zobalova, A. Bezawork-Geleta, M. Stapelberg, J. Stursa, K. Prokopova, L. Dong and J. Neuzil (2015). "Mitochondrially targeted vitamin E succinate efficiently kills breast tumour-initiating cells in a complex II-dependent manner." BMC Cancer 15: 401.
Youn, S., K. I. Kim, J. Ptacek, K. Ok, Z. Novakova, Y. Kim, J. Koo, C. Barinka and Y. Byun (2015). "Carborane-containing urea-based inhibitors of glutamate carboxypeptidase II: Synthesis and structural characterization." Bioorg Med Chem Lett 25(22): 5232-5236.
Zigo, M., A. Dorosh, A. Pohlova, V. Jonakova, M. Sulc and P. Manaskova-Postlerova (2015). "Panel of monoclonal antibodies to sperm surface proteins as a tool for monitoring localization and identification of sperm-zona pellucida receptors." Cell Tissue Res 359(3): 895-908.

2014

Alavi, S. M., P. Postlerova-Manaskova, A. Hatef, M. Psenicka, J. Peknicova, K. Inaba, A. Ciereszko and O. Linhart (2014). "Protease in sturgeon sperm and the effects of protease inhibitors on sperm motility and velocity." Fish Physiol Biochem 40(5): 1393-1398.
Anderova, M., J. Benesova, M. Mikesova, D. Dzamba, P. Honsa, J. Kriska, O. Butenko, V. Novosadova, L. Valihrach, M. Kubista, L. Dmytrenko, M. Cicanic and L. Vargova (2014). "Altered Astrocytic Swelling in the Cortex of alpha-Syntrophin-Negative GFAP/EGFP Mice." Plos One 9(11).
Bohuslavova, R., F. Kolar, D. Sedmera, L. Skvorova, F. Papousek, J. Neckar and G. Pavlinkova (2014). "Partial deficiency of HIF-1alpha stimulates pathological cardiac changes in streptozotocin-induced diabetic mice." BMC Endocr Disord 14: 11.
Conrad, S., H. Azizi, M. Hatami, M. Kubista, M. Bonin, J. Hennenlotter, M. Renninger and T. Skutella (2014). "Differential Gene Expression Profiling of Enriched Human Spermatogonia after Short- and Long-Term Culture." Biomed Research International.
Dong, L. F. and J. Neuzil (2014). "Mitochondria in cancer: why mitochondria are a good target for cancer therapy." Prog Mol Biol Transl Sci 127: 211-227.
Dvorakova-Hortova, K., A. Sidlova, L. Ded, D. Hladovcova, M. Vieweg, W. Weidner, K. Steger, P. Stopka and A. Paradowska-Dogan (2014). "Toxoplasma gondii decreases the reproductive fitness in mice." Plos One 9(6): e96770.
Honsa, P., H. Pivonkova, L. Harantova, O. Butenko, J. Kriska, D. Dzamba, V. Rusnakova, L. Valihrach, M. Kubista and M. Anderova (2014). "Increased Expression of Hyperpolarization-Activated Cyclic Nucleotide-Gated (HCN) Channels in Reactive Astrocytes Following Ischemia." Glia 62(12): 2004-2021.
Hwang, M. S., J. Rohlena, L. F. Dong, J. Neuzil and S. Grimm (2014). "Powerhouse down: Complex II dissociation in the respiratory chain." Mitochondrion 19 Pt A: 20-28.
Jacox, L., R. Sindelka, J. Chen, A. Rothman, A. Dickinson and H. Sive (2014). "The extreme anterior domain is an essential craniofacial organizer acting through Kinin-Kallikrein signaling." Cell Rep 8(2): 596-609.
Kovarova, J., M. Bajzikova, M. Vondrusova, J. Stursa, J. Goodwin, M. Nguyen, R. Zobalova, E. A. Pesdar, J. Truksa, M. Tomasetti, L. F. Dong and J. Neuzil (2014). "Mitochondrial targeting of alpha-tocopheryl succinate enhances its anti-mesothelioma efficacy." Redox Rep 19(1): 16-25.
Kubista, M., R. Sjoback, M. Jindrichova, E. Rohlova, V. Rusnakova, S. Hauch, B. Aktas, M. Tewes, M. Bredemeier and S. Kasimir-Bauer (2014). "High Throughput Few and Single Cell Expression Profiling and the Characterization of Circulating Tumor Cells." Anticancer Research 34(10): 6014-6014.
Kuchar, M., L. Vankova, H. Petrokova, J. Cerny, R. Osicka, O. Pelak, H. Sipova, B. Schneider, J. Homola, P. Sebo, T. Kalina and P. Maly (2014). "Human interleukin-23 receptor antagonists derived from an albumin-binding domain scaffold inhibit IL-23-dependent ex vivo expansion of IL-17-producing T-cells." Proteins 82(6): 975-989.
Malentacchi, F., M. Pazzagli, L. Simi, C. Orlando, R. Wyrich, K. Gunther, P. Verderio, S. Pizzamiglio, C. M. Ciniselli, H. Zhang, V. Korenkova, L. Rainen, T. Bar, M. Kubista and S. Gelmini (2014). "SPIDIA-RNA: Second External Quality Assessment for the Pre-Analytical Phase of Blood Samples Used for RNA Based Analyses." Plos One 9(11).
Mikešová, J., J. Hašek, G. Tishchenko and P. MorganticaInstitute (2014). "Rheological study of chitosan acetate solutions containing chitinnanofibrils." Carbohydrate Polymers 112: 753-757.
Navratil, M., J. Ptacek, P. Sacha, J. Starkova, J. Lubkowski, C. Barinka and J. Konvalinka (2014). "Structural and biochemical characterization of the folyl-poly-gamma-l-glutamate hydrolyzing activity of human glutamate carboxypeptidase II." FEBS J 281(14): 3228-3242.
Nunvar, J., D. Elhottova, A. Chronakova, B. Schneider and I. Licha (2014). "Draft Genome Sequence of Stenotrophomonas maltophilia Strain 5BA-I-2, a Soil Isolate and a Member of a Phylogenetically Basal Lineage." Genome Announc 2(2).
Pavlicek, J., J. Ptacek, J. Cerny, Y. Byun, L. Skultetyova, M. G. Pomper, J. Lubkowski and C. Barinka (2014). "Structural characterization of P1'-diversified urea-based inhibitors of glutamate carboxypeptidase II." Bioorg Med Chem Lett 24(10): 2340-2345.
Sebkova, N., L. Ded, K. Vesela and K. Dvorakova-Hortova (2014). "Progress of sperm IZUMO1 relocation during spontaneous acrosome reaction." Reproduction 147(2): 231-240.
Schneider, B., J. Cerny, D. Svozil, P. Cech, J. C. Gelly and A. G. de Brevern (2014). "Bioinformatic analysis of the protein/DNA interface." Nucleic Acids Research 42(5): 3381-3394.
Schneider, B., J. C. Gelly, A. G. de Brevern and J. Cerny (2014). "Local dynamics of proteins and DNA evaluated from crystallographic B factors." Acta Crystallogr D Biol Crystallogr 70(Pt 9): 2413-2419.
Slyskova, J., Y. Lorenzo, A. Karlsen, M. H. Carlsen, V. Novosadova, R. Blomhoff, P. Vodicka and A. R. Collins (2014). "Both genetic and dietary factors underlie individual differences in DNA damage levels and DNA repair capacity." DNA Repair (Amst) 16: 66-73.
Stahlberg, A. and M. Kubista (2014). "The workflow of single-cell expression profiling using quantitative real-time PCR." Expert Review of Molecular Diagnostics 14(3): 323-331.
Stapelberg, M., R. Zobalova, M. N. Nguyen, T. Walker, M. Stantic, J. Goodwin, E. A. Pasdar, T. Thai, K. Prokopova, B. Yan, S. Hall, N. de Pennington, S. R. Thomas, G. Grant, J. Stursa, M. Bajzikova, A. C. B. Meedeniya, J. Truksa, S. J. Ralph, O. Ansorge, L. F. Dong and J. Neuzil (2014). "Indoleamine-2,3-dioxygenase elevated in tumor-initiating cells is suppressed by mitocans." Free Radical Biology and Medicine 67: 41-50.
Stránský, J. and J. Dohnálek (2014). "Optimalizace parametrů pro řešení fázového problému metodou S-SAD." Sborník Čtvrté Studentské vědecké konference fyziky pevných látek FJFI ČVUT, 23. - 27. 6. 2014, Penzion Kamínek: 67-72.
Tomasetti, M., L. Santarelli, J. Neuzil and L. Dong (2014). "MicroRNA regulation of cancer metabolism: role in tumour suppression." Mitochondrion 19 Pt A: 29-38.
Tomasetti, M., L. Nocchi, S. Staffolani, N. Manzella, M. Amati, J. Goodwin, K. Kluckova, M. Nguyen, E. Strafella, M. Bajzikova, M. Peterka, S. Lettlova, J. Truksa, W. Lee, L. F. Dong, L. Santarelli and J. Neuzil (2014). "MicroRNA-126 suppresses mesothelioma malignancy by targeting IRS1 and interfering with the mitochondrial function." Antioxid Redox Signal 21(15): 2109-2125.
Tomasetti, M., J. Neuzil and L. Dong (2014). "MicroRNAs as regulators of mitochondrial function: role in cancer suppression." Biochim Biophys Acta 1840(4): 1441-1453.
Tykvart, J., V. Navratil, F. Sedlak, E. Corey, M. Colombatti, G. Fracasso, F. Koukolik, C. Barinka, P. Sacha and J. Konvalinka (2014). "Comparative analysis of monoclonal antibodies against prostate-specific membrane antigen (PSMA)." Prostate 74(16): 1674-1690.
Vymetal, J., S. R. Bathula, J. Cerny, R. Chaloupkova, L. Zidek, V. Sklenar and J. Vondrasek (2014). "Retro operation on the Trp-cage miniprotein sequence produces an unstructured molecule capable of folding similar to the original only upon 2,2,2-trifluoroethanol addition." Protein Eng Des Sel 27(12): 463-472.
Vymetalkova, V. P., J. Slyskova, V. Korenkova, L. Bielik, L. Langerova, P. Prochazka, A. Rejhova, L. Schwarzova, B. Pardini, A. Naccarati and P. Vodicka (2014). "Molecular characteristics of mismatch repair genes in sporadic colorectal tumors in Czech patients." BMC Med Genet 15: 17.
Yanamala, N., A. A. Kapralov, M. Djukic, J. Peterson, G. Mao, J. Klein-Seetharaman, D. A. Stoyanovsky, J. Stursa, J. Neuzil and V. E. Kagan (2014). "Structural re-arrangement and peroxidase activation of cytochrome c by anionic analogues of vitamin E, tocopherol succinate and tocopherol phosphate." J Biol Chem 289(47): 32488-32498.
Zatecka, E., L. Ded, F. Elzeinova, A. Kubatova, A. Dorosh, H. Margaryan, P. Dostalova, V. Korenkova, K. Hoskova and J. Peknicova (2014). "Effect of zearalenone on reproductive parameters and expression of selected testicular genes in mice." Reprod Toxicol 45: 20-30.
Zatecka, E., J. Castillo, F. Elzeinova, A. Kubatova, L. Ded, J. Peknicova and R. Oliva (2014). "The effect of tetrabromobisphenol A on protamine content and DNA integrity in mouse spermatozoa." Andrology 2(6): 910-917.
Zhang, H., V. Korenkova, R. Sjoback, D. Svec, J. Bjorkman, M. Kruhoffer, P. Verderio, S. Pizzamiglio, C. M. Ciniselli, R. Wyrich, U. Oelmueller, M. Kubista, T. Lindahl, A. Lonneborg and E. Rian (2014). "Biomarkers for monitoring pre-analytical quality variation of mRNA in blood samples." Plos One 9(11): e111644.

2013

Andersson, D., U. Wilhelmsson, M. Nilsson, M. Kubista, A. Stahlberg, M. Pekna and M. Pekny (2013). "Plasticity Response in the Contralesional Hemisphere after Subtle Neurotrauma: Gene Expression Profiling after Partial Deafferentation of the Hippocampus." Plos One 8(7).
Bohuslavova, R., L. Skvorova, D. Sedmera, G. L. Semenza and G. Pavlinkova (2013). "Increased susceptibility of HIF-1alpha heterozygous-null mice to cardiovascular malformations associated with maternal diabetes." J Mol Cell Cardiol 60: 129-141.
Bustin, S. A., V. Benes, J. Garson, J. Hellemans, J. Huggett, M. Kubista, R. Mueller, T. Nolan, M. W. Pfaffl, G. Shipley, C. T. Wittwer, P. Schjerling, P. J. Day, M. Abreu, B. Aguado, J. F. Beaulieu, A. Beckers, S. Bogaert, J. A. Browne, F. Carrasco-Ramiro, L. Ceelen, K. Ciborowski, P. Cornillie, S. Coulon, A. Cuypers, S. De Brouwer, L. De Ceuninck, J. De Craene, H. De Naeyer, W. De Spiegelaere, K. Deckers, A. Dheedene, K. Durinck, M. Ferreira-Teixeira, A. Fieuw, J. M. Gallup, S. Gonzalo-Flores, K. Goossens, F. Heindryckx, E. Herring, H. Hoenicka, L. Icardi, R. Jaggi, F. Javad, M. Karampelias, F. Kibenge, M. Kibenge, C. Kumps, I. Lambertz, T. Lammens, A. Markey, P. Messiaen, E. Mets, S. Morais, A. Mudarra-Rubio, J. Nakiwala, H. Nelis, P. A. Olsvik, C. Perez-Novo, M. Plusquin, T. Remans, A. Rihani, P. Rodrigues-Santos, P. Rondou, R. Sanders, K. Schmidt-Bleek, K. Skovgaard, K. Smeets, L. Tabera, S. Toegel, T. Van Acker, W. Van den Broeck, J. Van der Meulen, M. Van Gele, G. Van Peer, M. Van Poucke, N. Van Roy, S. Vergult, J. Wauman, M. Tshuikina-Wiklander, E. Willems, S. Zaccara, F. Zeka and J. Vandesompele (2013). "The need for transparency and good practices in the qPCR literature." Nature Methods 10(11): 1063-1067.
Cech, P., J. Kukal, J. Cerny, B. Schneider and D. Svozil (2013). "Automatic workflow for the classification of local DNA conformations." BMC Bioinformatics 14: 205.
Ded, L., N. Sebkova, M. Cerna, F. Elzeinova, P. Dostalova, J. Peknicova and K. Dvorakova-Hortova (2013). "In vivo exposure to 17beta-estradiol triggers premature sperm capacitation in cauda epididymis." Reproduction 145(3): 255-263.
Dorosh, A., O. Tepla, E. Zatecka, L. Ded, K. Koci and J. Peknicova (2013). "Expression analysis of MND1/GAJ, SPATA22, GAPDHS and ACR genes in testicular biopsies from non-obstructive azoospermia (NOA) patients." Reprod Biol Endocrinol 11: 42.
Dusatkova, L., H. Zamrazilova, B. Sedlackova, J. Vcelak, P. Hlavaty, I. Aldhoon Hainerova, V. Korenkova, O. Bradnova, B. Bendlova, M. Kunesova and V. Hainer (2013). "Association of obesity susceptibility gene variants with metabolic syndrome and related traits in 1,443 Czech adolescents." Folia Biol (Praha) 59(3): 123-133.
Elzeinova, F., J. Peknicova, L. Ded, A. Kubatova, H. Margaryan, A. Dorosh, P. Makovicky and R. Rajmon (2013). "Adverse effect of tetracycline and doxycycline on testicular tissue and sperm parameters in CD1 outbred mice." Exp Toxicol Pathol 65(6): 911-917.
Flachsova, M., R. Sindelka and M. Kubista (2013). "Single blastomere expression profiling of Xenopus laevis embryos of 8 to 32-cells reveals developmental asymmetry." Scientific Reports 3.
Huggett, J. F., C. A. Foy, V. Benes, K. Emslie, J. A. Garson, R. Haynes, J. Hellemans, M. Kubista, R. D. M. T. Nolan, M. W. Pfaffl, M. W. Pfaffl, G. L. Shipley, J. Vandesompele, C. T. Wittwer and S. A. Bustin (2013). "The Digital MIQE Guidelines: Minimum Information for Publication of Quantitative Digital PCR Experiments." Clinical Chemistry 59(6): 892-902.
Kluckova, K., A. Bezawork-Geleta, J. Rohlena, L. Dong and J. Neuzil (2013). "Mitochondrial complex II, a novel target for anti-cancer agents." Biochim Biophys Acta 1827(5): 552-564.
Kovarova, N., T. Mracek, H. Nuskova, E. Holzerova, M. Vrbacky, P. Pecina, K. Hejzlarova, K. Kluckova, J. Rohlena, J. Neuzil and J. Houstek (2013). "High molecular weight forms of mammalian respiratory chain complex II." Plos One 8(8): e71869.
Kratochvilova, I., M. Vala, M. Weiter, M. Sperova, B. Schneider, O. Pav, J. Sebera, I. Rosenberg and V. Sychrovsky (2013). "Charge transfer through DNA/DNA duplexes and DNA/RNA hybrids: complex theoretical and experimental studies." Biophys Chem 180-181: 127-134.
Malentacchi, F., M. Pazzagli, L. Simi, C. Orlando, R. Wyrich, C. C. Hartmann, P. Verderio, S. Pizzamiglio, C. M. Ciniselli, A. Tichopad, M. Kubista and S. Gelmini (2013). "SPIDIA-DNA: An External Quality Assessment for the pre-analytical phase of blood samples used for DNA-based analyses." Clinica Chimica Acta 424: 274-286.
Mikulecky, P., J. Cerny, L. Biedermannova, H. Petrokova, M. Kuchar, J. Vondrasek, P. Maly, P. Sebo and B. Schneider (2013). "Increasing affinity of interferon-gamma receptor 1 to interferon-gamma by computer-aided design." Biomed Research International 2013: 752514.
Moreno-Sanchez, R., L. Hernandez-Esquivel, N. A. Rivero-Segura, A. Marin-Hernandez, J. Neuzil, S. J. Ralph and S. Rodriguez-Enriquez (2013). "Reactive oxygen species are generated by the respiratory complex II--evidence for lack of contribution of the reverse electron flow in complex I." FEBS J 280(3): 927-938.
Neuzil, J. and R. Moreno-Sanchez (2013). "Editorial: The Bioenergetics of Cancer, the Warburg Hypothesis and the Mitochondrial Function." Curr Pharm Biotechnol 14(3): 249-250.
Neuzil, J., L. F. Dong, J. Rohlena, J. Truksa and S. J. Ralph (2013). "Classification of mitocans, anti-cancer drugs acting on mitochondria." Mitochondrion 13(3): 199-208.
Nunvar, J., I. Licha and B. Schneider (2013). "Evolution of REP diversity: a comparative study." Bmc Genomics 14: 385.
Pazzagli, M., F. Malentacchi, L. Simi, C. Orlando, R. Wyrich, K. Gunther, C. C. Hartmann, P. Verderio, S. Pizzamiglio, C. M. Ciniselli, A. Tichopad, M. Kubista and S. Gelmini (2013). "SPIDIA-RNA: First external quality assessment for the pre-analytical phase of blood samples used for RNA based analyses." Methods 59(1): 20-31.
Polakova Vymetalkova, V., L. Vannucci, V. Korenkova, P. Prochazka, J. Slyskova, L. Vodickova, V. Rusnakova, L. Bielik, M. Burocziova, P. Rossmann and P. Vodicka (2013). "Evaluation of tumor suppressor gene expressions and aberrant methylation in the colon of cancer-induced rats: a pilot study." Mol Biol Rep 40(10): 5921-5929.
Prochazka, L., S. Koudelka, L. F. Dong, J. Stursa, J. Goodwin, J. Neca, J. Slavik, M. Ciganek, J. Masek, K. Kluckova, M. Nguyen, J. Turanek and J. Neuzil (2013). "Mitochondrial targeting overcomes ABCA1-dependent resistance of lung carcinoma to alpha-tocopheryl succinate." Apoptosis 18(3): 286-299.
Rohlena, J., L. F. Dong and J. Neuzil (2013). "Targeting the mitochondrial electron transport chain complexes for the induction of apoptosis and cancer treatment." Curr Pharm Biotechnol 14(3): 377-389.
Rusnakova, V., P. Honsa, D. Dzamba, A. Stahlberg, M. Kubista and M. Anderova (2013). "Heterogeneity of Astrocytes: From Development to Injury - Single Cell Gene Expression." Plos One 8(8).
Skalova, T., P. Kolenko, J. Duskova, T. Koval, J. Hasek, J. Stransky and J. Dohnalek (2013). "NK receptors and ligands with C-type lectine-like fold: Structure and function." Acta Crystallographica a-Foundation and Advances 69: S302-S302.
Sorg, D., K. Danowski, V. Korenkova, V. Rusnakova, R. Kuffner, R. Zimmer, H. H. Meyer and H. Kliem (2013). "Microfluidic high-throughput RT-qPCR measurements of the immune response of primary bovine mammary epithelial cells cultured from milk to mastitis pathogens." Animal 7(5): 799-805.
Stahlberg, A., V. Rusnakova, A. Forootan, M. Anderova and M. Kubista (2013). "RT-qPCR work-flow for single-cell data analysis." Methods 59(1): 80-88.
Stahlberg, A., V. Rusnakova and M. Kubista (2013). "The added value of single-cell gene expression profiling." Briefings in Functional Genomics 12(2): 81-89.
Svec, D., D. Andersson, M. Pekny, R. Sjoback, M. Kubista and A. Stahlberg (2013). "Direct cell lysis for single-cell gene expression profiling." Front Oncol 3: 274.
Svec, D., V. Rusnakova, V. Korenkova and M. Kubista (2013). "Dye-Based High-Throughput qPCR in Microfluidic Platform BioMark (TM)." Pcr Technology: Current Innovations, 3rd Edition: 323-337.
Virant-Klun, I., T. Skutella, M. Kubista, A. Vogler, J. Sinkovec and H. Meden-Vrtovec (2013). "Expression of Pluripotency and Oocyte-Related Genes in Single Putative Stem Cells from Human Adult Ovarian Surface Epithelium Cultured In Vitro in the Presence of Follicular Fluid." Biomed Research International.
Zatecka, E., L. Ded, F. Elzeinova, A. Kubatova, A. Dorosh, H. Margaryan, P. Dostalova and J. Peknicova (2013). "Effect of tetrabrombisphenol A on induction of apoptosis in the testes and changes in expression of selected testicular genes in CD1 mice." Reprod Toxicol 35: 32-39.
Zigo, M., V. Jonakova, M. Sulc and P. Manaskova-Postlerova (2013). "Characterization of sperm surface protein patterns of ejaculated and capacitated boar sperm, with the detection of ZP binding candidates." Int J Biol Macromol 61: 322-328.

2012

Ahmad, J. N., J. Li, L. Biedermannova, M. Kuchar, H. Sipova, A. Semeradtova, J. Cerny, H. Petrokova, P. Mikulecky, J. Polinek, O. Stanek, J. Vondrasek, J. Homola, J. Maly, R. Osicka, P. Sebo and P. Maly (2012). "Novel high-affinity binders of human interferon gamma derived from albumin-binding domain of protein G." Proteins 80(3): 774-789.
Alquicer, G., D. Sedlak, Y. Byun, J. Pavlicek, M. Stathis, C. Rojas, B. Slusher, M. G. Pomper, P. Bartunek and C. Barinka (2012). "Development of a high-throughput fluorescence polarization assay to identify novel ligands of glutamate carboxypeptidase II." J Biomol Screen 17(8): 1030-1040.
Bar, T., M. Kubista and A. Tichopad (2012). "Validation of kinetics similarity in qPCR." Nucleic Acids Research 40(4): 1395-1406.
Barinka, C., C. Rojas, B. Slusher and M. Pomper (2012). "Glutamate carboxypeptidase II in diagnosis and treatment of neurologic disorders and prostate cancer." Curr Med Chem 19(6): 856-870.
Benesova, J., V. Rusnakova, P. Honsa, H. Pivonkova, D. Dzamba, M. Kubista and M. Anderova (2012). "Distinct Expression/Function of Potassium and Chloride Channels Contributes to the Diverse Volume Regulation in Cortical Astrocytes of GFAP/EGFP Mice." Plos One 7(1).
Bibova, I., I. Linhartova, O. Stanek, V. Rusnakova, M. Kubista, M. Suchanek, M. Vasakova and P. Sebo (2012). "Detection of immune cell response to M. tuberculosis-specific antigens by quantitative polymerase chain reaction." Diagnostic Microbiology and Infectious Disease 72(1): 68-78.
Capkova, J., T. Hrncir, A. Kubatova and H. Tlaskalova-Hogenova (2012). "Lipopolysaccharide treatment suppresses spontaneously developing ankylosing enthesopathy in B10.BR male mice: the potential role of interleukin-10." BMC Musculoskelet Disord 13: 110.
Dong, L. F., G. Grant, H. Massa, R. Zobalova, E. Akporiaye and J. Neuzil (2012). "alpha-Tocopheryloxyacetic acid is superior to alpha-tocopheryl succinate in suppressing HER2-high breast carcinomas due to its higher stability." Int J Cancer 131(5): 1052-1058.
Gunther, K., F. Malentacchi, P. Verderio, S. Pizzamiglio, C. M. Ciniselli, A. Tichopad, M. Kubista, R. Wyrich, M. Pazzagli and S. Gelmini (2012). "Implementation of a proficiency testing for the assessment of the preanalytical phase of blood samples used for RNA based analysis." Clinica Chimica Acta 413(7-8): 779-786.
Kubista, M., V. Rusnakova, D. Svec, B. Sjogreen and A. Tichopad (2012). "GenEx: Data Analysis Software." Quantitative Real-Time Pcr in Applied Microbiology: 63-84.
Kubista, M. (2012). "Drivers and Hurdles for qPCR." Genetic Engineering & Biotechnology News 32(9): 24-+.
Kubista, M. (2012). "I See the Light! And I See It Again and Again!" Clinical Chemistry 58(11): 1505-1506.
Laurell, H., J. S. Iacovoni, A. Abot, D. Svec, J. J. Maoret, J. F. Arnal and M. Kubista (2012). "Correction of RT-qPCR data for genomic DNA-derived signals with ValidPrime." Nucleic Acids Research 40(7).
Midwinter, R. G., G. J. Maghzal, J. M. Dennis, B. J. Wu, H. Cai, A. A. Kapralov, N. A. Belikova, Y. Y. Tyurina, L. F. Dong, L. Khachigian, J. Neuzil, V. E. Kagan and R. Stocker (2012). "Succinobucol induces apoptosis in vascular smooth muscle cells." Free Radic Biol Med 52(5): 871-879.
Neuzil, J., J. Rohlena and L.-F. Dong (2012). "K-Ras and mitochondria: Dangerous liaisons." Cell Research 22(2): 285-287.
Pavlicek, J., J. Ptacek and C. Barinka (2012). "Glutamate carboxypeptidase II: an overview of structural studies and their importance for structure-based drug design and deciphering the reaction mechanism of the enzyme." Curr Med Chem 19(9): 1300-1309.
Rodriguez-Enriquez, S., L. Hernandez-Esquivel, A. Marin-Hernandez, L. F. Dong, E. T. Akporiaye, J. Neuzil, S. J. Ralph and R. Moreno-Sanchez (2012). "Molecular mechanism for the selective impairment of cancer mitochondrial function by a mitochondrially targeted vitamin E analogue." Biochim Biophys Acta 1817(9): 1597-1607.
Rozbesky, D., P. Man, D. Kavan, J. Chmelik, J. Cerny, K. Bezouska and P. Novak (2012). "Chemical cross-linking and H/D exchange for fast refinement of protein crystal structure." Anal Chem 84(2): 867-870.
Sebkova, N., M. Cerna, L. Ded, J. Peknicova and K. Dvorakova-Hortova (2012). "The slower the better: how sperm capacitation and acrosome reaction is modified in the presence of estrogens." Reproduction 143(3): 297-307.
Sipova, H., V. Sevcu, M. Kuchar, J. N. Ahmad, P. Mikulecky, R. Osicka, P. Maly and J. Homola (2012). "Surface plasmon resonance biosensor based on engineered proteins for direct detection of interferon-gamma in diluted blood plasma." Sensors and Actuators B-Chemical 174: 306-311.
Slyskova, J., V. Korenkova, A. R. Collins, P. Prochazka, L. Vodickova, J. Svec, L. Lipska, M. Levy, M. Schneiderova, V. Liska, L. Holubec, R. Kumar, P. Soucek, A. Naccarati and P. Vodicka (2012). "Functional, genetic, and epigenetic aspects of base and nucleotide excision repair in colorectal carcinomas." Clin Cancer Res 18(21): 5878-5887.
Stimpfel, M., T. Skutella, M. Kubista, E. Malicev, S. Conrad and I. Virant-Klun (2012). "Potential Stemness of Frozen-Thawed Testicular Biopsies without Sperm in Infertile Men Included into the In Vitro Fertilization Programme." Journal of Biomedicine and Biotechnology.
Tomasetti, M., L. Nocchi, J. Neuzil, J. Goodwin, M. Nguyen, L. Dong, N. Manzella, S. Staffolani, C. Milanese, B. Garrone, R. Alleva, B. Borghi, L. Santarelli and R. Guerrieri (2012). "Alpha-tocopheryl succinate inhibits autophagic survival of prostate cancer cells induced by vitamin K3 and ascorbate to trigger cell death." Plos One 7(12): e52263.
Tykvart, J., P. Sacha, C. Barinka, T. Knedlik, J. Starkova, J. Lubkowski and J. Konvalinka (2012). "Efficient and versatile one-step affinity purification of in vivo biotinylated proteins: expression, characterization and structure analysis of recombinant human glutamate carboxypeptidase II." Protein Expr Purif 82(1): 106-115.
Yi, Y. J., S. W. Zimmerman, G. Manandhar, J. F. Odhiambo, C. Kennedy, V. Jonakova, P. Manaskova-Postlerova, M. Sutovsky, C. S. Park and P. Sutovsky (2012). "Ubiquitin-activating enzyme (UBA1) is required for sperm capacitation, acrosomal exocytosis and sperm-egg coat penetration during porcine fertilization." Int J Androl 35(2): 196-210.

2011

Armentano, A., J. Cerny, M. Riese, M. Taherkhani, M. Ben Yezzar and K. Muller-Dethlefs (2011). "Spectral shifts and structures of phenol...Ar(n) clusters." Phys Chem Chem Phys 13(13): 6077-6084.
Benda, L., B. Schneider and V. Sychrovsky (2011). "Calculating the response of NMR shielding tensor sigma(31P) and 2J(31P,13C) coupling constants in nucleic acid phosphate to coordination of the Mg2+ cation." J Phys Chem A 115(11): 2385-2395.
Brevik, A., V. Rusnakova, N. Duale, H. H. Slagsvold, A. K. Olsen, R. Storeng, M. Kubista, G. Brunborg and B. Lindeman (2011). "Preconceptional paternal glycidamide exposure affects embryonic gene expression: Single embryo gene expression study following in vitro fertilization." Reproductive Toxicology 32(4): 463-471.
Bustin, S. A., V. Benes, J. A. Garson, J. Hellemans, J. Huggett, M. Kubista, R. Mueller, T. Nolan, M. W. Pfaffl, G. L. Shipley, J. Vandesompele and C. T. Wittwer (2011). "Primer Sequence Disclosure: A Clarification of the MIQE Guidelines." Clinical Chemistry 57(6): 919-921.
Cerny, J., M. Pitonak, K. E. Riley and P. Hobza (2011). "Complete Basis Set Extrapolation and Hybrid Schemes for Geometry Gradients of Noncovalent Complexes." J Chem Theory Comput 7(12): 3924-3934.
Dong, L. F., V. J. Jameson, D. Tilly, J. Cerny, E. Mahdavian, A. Marin-Hernandez, L. Hernandez-Esquivel, S. Rodriguez-Enriquez, J. Stursa, P. K. Witting, B. Stantic, J. Rohlena, J. Truksa, K. Kluckova, J. C. Dyason, M. Ledvina, B. A. Salvatore, R. Moreno-Sanchez, M. J. Coster, S. J. Ralph, R. A. Smith and J. Neuzil (2011). "Mitochondrial targeting of vitamin E succinate enhances its pro-apoptotic and anti-cancer activity via mitochondrial complex II." J Biol Chem 286(5): 3717-3728.
Dong, L. F., V. J. Jameson, D. Tilly, L. Prochazka, J. Rohlena, K. Valis, J. Truksa, R. Zobalova, E. Mahdavian, K. Kluckova, M. Stantic, J. Stursa, R. Freeman, P. K. Witting, E. Norberg, J. Goodwin, B. A. Salvatore, J. Novotna, J. Turanek, M. Ledvina, P. Hozak, B. Zhivotovsky, M. J. Coster, S. J. Ralph, R. A. Smith and J. Neuzil (2011). "Mitochondrial targeting of alpha-tocopheryl succinate enhances its pro-apoptotic efficacy: a new paradigm for effective cancer therapy." Free Radic Biol Med 50(11): 1546-1555.
Dorosh, A. (2011). "Monoclonal Antibody 6E4 Against Human GAPDHS Protein." Hybridoma 30(3): 321-321.
Dorosh, A., L. Ded, F. Elzeinova and J. Peknicova (2011). "Assessing oestrogenic effects of brominated flame retardants hexabromocyclododecane and tetrabromobisphenol A on MCF-7 cells." Folia Biol (Praha) 57(1): 35-39.
Drab, T., J. Kracmerova, I. Ticha, E. Hanzlikova, M. Ticha, H. Ryslava, V. Doubnerova, P. Manaskova-Postlerova and J. Liberda (2011). "Native red electrophoresis--a new method suitable for separation of native proteins." Electrophoresis 32(24): 3597-3599.
Ito, K., S. A. Scott, S. Cutler, L. F. Dong, J. Neuzil, H. Blanchard and S. J. Ralph (2011). "Thiodigalactoside inhibits murine cancers by concurrently blocking effects of galectin-1 on immune dysregulation, angiogenesis and protection against oxidative stress." Angiogenesis 14(3): 293-307.
Klusák, V., P. Dobeš, J. Černý and J. Vondrášek (2011). "How to fragment a polypeptide? An ab initio computational study of pair interactions between amino acids and ligand-amino acids in proteins." Collection of Czechoslovak Chemical Communications 76(5): 605-618.
Krejcirikova, V., P. Pachl, M. Fabry, P. Maly, P. Rezacova and J. Brynda (2011). "Structure of the mouse galectin-4 N-terminal carbohydrate-recognition domain reveals the mechanism of oligosaccharide recognition." Acta Crystallographica Section D-Structural Biology 67: 204-211.
Manaskova-Postlerova, P., N. Davidova, M. Sulc, A. Philimonenko, P. Hozak and V. Jonakova (2011). "Reproductive tissue expression and sperm localization of porcine beta-microseminoprotein." Cell Tissue Res 344(2): 341-353.
Manaskova-Postlerova, P., N. Davidova and V. Jonakova (2011). "Biochemical and binding characteristics of boar epididymal fluid proteins." J Chromatogr B Analyt Technol Biomed Life Sci 879(1): 100-106.
Neuzil, J., J. Cerny, J. C. Dyason, L. F. Dong and S. J. Ralph (2011). "Affinity of vitamin E analogues for the ubiquinone complex II site correlates with their toxicity to cancer cells." Mol Nutr Food Res 55(10): 1543-1551.
Nocchi, L., M. Tomasetti, M. Amati, J. Neuzil, L. Santarelli and F. Saccucci (2011). "Thrombomodulin is silenced in malignant mesothelioma by a poly(ADP-ribose) polymerase-1-mediated epigenetic mechanism." J Biol Chem 286(22): 19478-19488.
Pazzagli, M., F. Malentacchi, L. Simi, C. Orlando, R. Wyrich, K. Gunther, C. Hartmann, P. Verderio, S. Pizzamiglio, C. M. Ciniselli, A. Tichopad, M. Kubista and S. Gelmini (2011). "Evidence-Based Quality Guidelines for the Pre-Analytical Phase of Blood Samples." Clinical Chemistry and Laboratory Medicine 49: S128-S128.
Plechanovova, A., Y. Byun, G. Alquicer, L. Skultetyova, P. Mlcochova, A. Nemcova, H. J. Kim, M. Navratil, R. Mease, J. Lubkowski, M. Pomper, J. Konvalinka, L. Rulisek and C. Barinka (2011). "Novel substrate-based inhibitors of human glutamate carboxypeptidase II with enhanced lipophilicity." J Med Chem 54(21): 7535-7546.
Ralph, S. J., R. Moreno-Sanchez, J. Neuzil and S. Rodriguez-Enriquez (2011). "Inhibitors of succinate: quinone reductase/Complex II regulate production of mitochondrial reactive oxygen species and protect normal cells from ischemic damage but induce specific cancer cell death." Pharm Res 28(11): 2695-2730.
Rohlena, J., L. F. Dong, S. J. Ralph and J. Neuzil (2011). "Anticancer drugs targeting the mitochondrial electron transport chain." Antioxid Redox Signal 15(12): 2951-2974.
Rohlena, J., L. F. Dong, K. Kluckova, R. Zobalova, J. Goodwin, D. Tilly, J. Stursa, A. Pecinova, A. Philimonenko, P. Hozak, J. Banerjee, M. Ledvina, C. K. Sen, J. Houstek, M. J. Coster and J. Neuzil (2011). "Mitochondrially targeted alpha-tocopheryl succinate is antiangiogenic: potential benefit against tumor angiogenesis but caution against wound healing." Antioxid Redox Signal 15(12): 2923-2935.
Salbaum, J. M., C. Kruger, X. Zhang, N. A. Delahaye, G. Pavlinkova, D. H. Burk and C. Kappen (2011). "Altered gene expression and spongiotrophoblast differentiation in placenta from a mouse model of diabetes in pregnancy." Diabetologia 54(7): 1909-1920.
Santarelli, L., E. Strafella, S. Staffolani, M. Amati, M. Emanuelli, D. Sartini, V. Pozzi, D. Carbonari, M. Bracci, E. Pignotti, P. Mazzanti, A. Sabbatini, R. Ranaldi, S. Gasparini, J. Neuzil and M. Tomasetti (2011). "Association of MiR-126 with soluble mesothelin-related peptides, a marker for malignant mesothelioma." Plos One 6(4): e18232.
Stahlberg, A., M. Kubista and P. Aman (2011). "Single-cell gene-expression profiling and its potential diagnostic applications." Expert Review of Molecular Diagnostics 11(7): 735-740.
Stahlberg, A., D. Andersson, J. Aurelius, M. Faiz, M. Pekna, M. Kubista and M. Pekny (2011). "Defining cell populations with single-cell gene expression profiling: correlations and identification of astrocyte subpopulations." Nucleic Acids Research 39(4).
Tomasetti, M., M. Amati, L. Nocchi, F. Saccucci, E. Strafella, S. Staffolani, L. M. Tarquini, D. Carbonari, R. Alleva, B. Borghi, J. Neuzil, M. Bracci and L. Santarelli (2011). "Asbestos exposure affects poly(ADP-ribose) polymerase-1 activity: role in asbestos-induced carcinogenesis." Mutagenesis 26(5): 585-591.
Uhnakova, B., R. Ludwig, J. Peknicova, L. Homolka, L. Lisa, M. Sulc, A. Petrickova, F. Elzeinova, H. Pelantova, D. Monti, V. Kren, D. Haltrich and L. Martinkova (2011). "Biodegradation of tetrabromobisphenol A by oxidases in basidiomycetous fungi and estrogenic activity of the biotransformation products." Bioresour Technol 102(20): 9409-9415.
Valis, K., L. Prochazka, E. Boura, J. Chladova, T. Obsil, J. Rohlena, J. Truksa, L.-F. Dong, S. J. Ralph and J. Neuzil (2011). "Hippo/Mst1 Stimulates Transcription of the Proapoptotic Mediator NOXA in a FoxO1-Dependent Manner." Cancer Research 71(3): 946-954.
Zigo, M., V. Jonakova and P. Manaskova-Postlerova (2011). "Electrophoretic and zymographic characterization of proteins isolated by various extraction methods from ejaculated and capacitated boar sperms." Electrophoresis 32(11): 1309-1318.
Zobalova, R., K. Prokopova, M. Stantic, M. Stapelberg, L. F. Dong, S. J. Ralph, E. Akporiaye and J. Neuzil (2011). "The potential role of CD133 in immune surveillance and apoptosis: a mitochondrial connection?" Antioxid Redox Signal 15(12): 2989-3002.

2010

Bergkvist, A., V. Rusnakova, R. Sindelka, J. M. A. Garda, B. Sjogreen, D. Lindh, A. Forootan and M. Kubista (2010). "Gene expression profiling - Clusters of possibilities." Methods 50(4): 323-335.
Biasutto, L., L. F. Dong, M. Zoratti and J. Neuzil (2010). "Mitochondrially targeted anti-cancer agents." Mitochondrion 10(6): 670-681.
Bohuslavova, R., F. Kolar, L. Kuthanova, J. Neckar, A. Tichopad and G. Pavlinkova (2010). "Gene expression profiling of sex differences in HIF1-dependent adaptive cardiac responses to chronic hypoxia." J Appl Physiol (1985) 109(4): 1195-1202.
Cerny, J. and P. Hobza (2010). "Energy barriers between H-bonded and stacked structures of 9-methyladenine...1-methylthymine and 9-methylguanine...1-methylcytosine complexes." Chem Commun (Camb) 46(3): 383-385.
Coll, A., A. Nadal, R. Collado, G. Capellades, M. Kubista, J. Messeguer and M. Pla (2010). "Natural variation explains most transcriptomic changes among maize plants of MON810 and comparable non-GM varieties subjected to two N-fertilization farming practices." Plant Molecular Biology 73(3): 349-362.
Ded, L., P. Dostalova, A. Dorosh, K. Dvorakova-Hortova and J. Peknicova (2010). "Effect of estrogens on boar sperm capacitation in vitro." Reprod Biol Endocrinol 8: 87.
Joseph, A. P., G. Agarwal, S. Mahajan, J. C. Gelly, L. S. Swapna, B. Offmann, F. Cadet, A. Bornot, M. Tyagi, H. Valadie, B. Schneider, C. Etchebest, N. Srinivasan and A. G. De Brevern (2010). "A short survey on protein blocks." Biophys Rev 2(3): 137-147.
Kitchen, R. R., M. Kubista and A. Tichopad (2010). "Statistical aspects of quantitative real-time PCR experiment design." Methods 50(4): 231-236.
Kolostova, K., D. Pinterova, P. Tesarova, V. Bobek, V. Mikulova, M. Kubecova, M. Brychta, V. Rusnakova, S. Kasimir-Bauer and M. Kubista (2010). "Gene Expression Profiling in Circulating Cells (Ctcs) of Breast Carcinoma Patients." Annals of Oncology 21: 49-50.
Koudelka, S., J. Masek, J. Neuzil and J. Turanek (2010). "Lyophilised liposome-based formulations of alpha-tocopheryl succinate: preparation and physico-chemical characterisation." J Pharm Sci 99(5): 2434-2443.
Kozubenko, N., K. Turnovcova, M. Kapcalova, O. Butenko, M. Anderova, V. Rusnakova, M. Kubista, A. Hampl, P. Jendelova and E. Sykova (2010). "Analysis of In Vitro and In Vivo Characteristics of Human Embryonic Stem Cell-Derived Neural Precursors." Cell Transplantation 19(4): 471-486.
Kratochvilova, I., T. Todorciuc, K. Kral, H. Nemec, M. Buncek, J. Sebera, S. Zalis, Z. Vokacova, V. Sychrovsky, L. Bednarova, P. Mojzes and B. Schneider (2010). "Charge transport in DNA oligonucleotides with various base-pairing patterns." J Phys Chem B 114(15): 5196-5205.
Li, P., M. Hulak, P. Koubek, M. Sulc, B. Dzyuba, S. Boryshpolets, M. Rodina, D. Gela, P. Manaskova-Postlerova, J. Peknicova and O. Linhart (2010). "Ice-age endurance: the effects of cryopreservation on proteins of sperm of common carp, Cyprinus carpio L." Theriogenology 74(3): 413-423.
Mikulova, V., M. Cabinakova, J. Pobudova, P. Tesarova, D. Pavlista, K. Kolostova, M. Kubista, M. Romzova and T. Zima (2010). "The Role of Disseminated Tumor Cells and Circulating Tumor Cells in Management of Breast Cancer Patients." Tumor Biology 31: S73-S73.
Prochazka, L., L. F. Dong, K. Valis, R. Freeman, S. J. Ralph, J. Turanek and J. Neuzil (2010). "alpha-Tocopheryl succinate causes mitochondrial permeabilization by preferential formation of Bak channels." Apoptosis 15(7): 782-794.
Ralph, S. J., S. Rodriguez-Enriquez, J. Neuzil, E. Saavedra and R. Moreno-Sanchez (2010). "The causes of cancer revisited: "mitochondrial malignancy" and ROS-induced oncogenic transformation - why mitochondria are targets for cancer therapy." Mol Aspects Med 31(2): 145-170.
Ralph, S. J., S. Rodriguez-Enriquez, J. Neuzil and R. Moreno-Sanchez (2010). "Bioenergetic pathways in tumor mitochondria as targets for cancer therapy and the importance of the ROS-induced apoptotic trigger." Mol Aspects Med 31(1): 29-59.
Riley, K. E., M. Pitonak, J. Cerny and P. Hobza (2010). "On the Structure and Geometry of Biomolecular Binding Motifs (Hydrogen-Bonding, Stacking, X-H...pi): WFT and DFT Calculations." J Chem Theory Comput 6(1): 66-80.
Sindelka, R., M. Sidova, D. Svec and M. Kubista (2010). "Spatial expression profiles in the Xenopus laevis oocytes measured with qPCR tomography." Methods 51(1): 87-91.
Tichopad, A., T. Bar, L. Pecen, R. R. Kitchen, M. Kubista and M. W. Pfaffl (2010). "Quality control for quantitative PCR based on amplification compatibility test." Methods 50(4): 308-312.
Tomasetti, M., E. Strafella, S. Staffolani, L. Santarelli, J. Neuzil and R. Guerrieri (2010). "alpha-Tocopheryl succinate promotes selective cell death induced by vitamin K3 in combination with ascorbate." Br J Cancer 102(8): 1224-1234.
Yi, Y. J., G. Manandhar, M. Sutovsky, S. W. Zimmerman, V. Jonakova, F. W. van Leeuwen, R. Oko, C. S. Park and P. Sutovsky (2010). "Interference with the 19S proteasomal regulatory complex subunit PSMD4 on the sperm surface inhibits sperm-zona pellucida penetration during porcine fertilization." Cell Tissue Res 341(2): 325-340.
Yi, Y. J., G. Manandhar, M. Sutovsky, V. Jonakova, C. S. Park and P. Sutovsky (2010). "Inhibition of 19S proteasomal regulatory complex subunit PSMD8 increases polyspermy during porcine fertilization in vitro." J Reprod Immunol 84(2): 154-163.
Zanvit, P., A. Tichopad, M. Havlickova, O. Novotna, M. Jirkovska, K. Kolostova, D. Cechova, J. Julak, I. Sterzl and L. Prokesova (2010). "Adjuvant effect of Bacillus firmus on the expression of cytokines and toll-like receptors in mouse nasopharynx-associated lymphoid tissue (NALT) after intranasal immunization with inactivated influenza virus type A." Immunol Lett 134(1): 26-34.
Zhang, A. X., R. P. Murelli, C. Barinka, J. Michel, A. Cocleaza, W. L. Jorgensen, J. Lubkowski and D. A. Spiegel (2010). "A remote arene-binding site on prostate specific membrane antigen revealed by antibody-recruiting small molecules." J Am Chem Soc 132(36): 12711-12716.

2009

Bustin, S. A., V. Benes, J. A. Garson, J. Hellemans, J. Huggett, M. Kubista, R. Mueller, T. Nolan, M. W. Pfaffl, G. L. Shipley, J. Vandesompele and C. T. Wittwer (2009). "The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments." Clinical Chemistry 55(4): 611-622.
Cerny, J., J. Vondrasek and P. Hobza (2009). "Loss of dispersion energy changes the stability and folding/unfolding equilibrium of the Trp-cage protein." J Phys Chem B 113(16): 5657-5660.
Davidova, N., V. Jonakova and P. Manaskova-Postlerova (2009). "Expression and localization of acrosin inhibitor in boar reproductive tract." Cell Tissue Res 338(2): 303-311.
Dong, L. F., R. Freeman, J. Liu, R. Zobalova, A. Marin-Hernandez, M. Stantic, J. Rohlena, K. Valis, S. Rodriguez-Enriquez, B. Butcher, J. Goodwin, U. T. Brunk, P. K. Witting, R. Moreno-Sanchez, I. E. Scheffler, S. J. Ralph and J. Neuzil (2009). "Suppression of tumor growth in vivo by the mitocan alpha-tocopheryl succinate requires respiratory complex II." Clin Cancer Res 15(5): 1593-1600.
Masova, A., R. Sindelka, M. Kubista, J. Kindl and J. Jiracek (2009). "Gene expression responses in larvae of the fleshfly Sarcophaga bullata after immune stimulation." Folia Biol (Praha) 55(3): 98-106.
Moos, J., K. Rezabek, V. Filova, M. Moosova, J. Pavelkova and J. Peknicova (2009). "Comparison of follicular fluid and serum levels of Inhibin A and Inhibin B with calculated indices used as predictive markers of Ovarian Hyperstimulation Syndrome in IVF patients." Reprod Biol Endocrinol 7: 86.
Morrison, B. J., L. Andera, B. A. Reynolds, S. J. Ralph and J. Neuzil (2009). "Future use of mitocans against tumour-initiating cells?" Mol Nutr Food Res 53(1): 147-153.
Pytelkova, J., J. Hubert, M. Lepsik, J. Sobotnik, R. Sindelka, I. Krizkova, M. Horn and M. Mares (2009). "Digestive alpha-amylases of the flour moth Ephestia kuehniella--adaptation to alkaline environment and plant inhibitors." FEBS J 276(13): 3531-3546.
Ralph, S. J. and J. Neuzil (2009). "Mitochondria as targets for cancer therapy." Mol Nutr Food Res 53(1): 9-28.
Tichopad, A., R. Kitchen, I. Riedmaier, C. Becker, A. Stahlberg and M. Kubista (2009). "Design and Optimization of Reverse-Transcription Quantitative PCR Experiments." Clinical Chemistry 55(10): 1816-1823.
Turanek, J., X. F. Wang, P. Knotigova, S. Koudelka, L. F. Dong, E. Vrublova, E. Mahdavian, L. Prochazka, S. Sangsura, A. Vacek, B. A. Salvatore and J. Neuzil (2009). "Liposomal formulation of alpha-tocopheryl maleamide: in vitro and in vivo toxicological profile and anticancer effect against spontaneous breast carcinomas in mice." Toxicol Appl Pharmacol 237(3): 249-257.
Vokacova, Z., M. Budesinsky, I. Rosenberg, B. Schneider, J. Sponer and V. Sychrovsky (2009). "Structure and dynamics of the ApA, ApC, CpA, and CpC RNA dinucleoside monophosphates resolved with NMR scalar spin-spin couplings." J Phys Chem B 113(4): 1182-1191.

2008

Dong, L. F., P. Low, J. C. Dyason, X. F. Wang, L. Prochazka, P. K. Witting, R. Freeman, E. Swettenham, K. Valis, J. Liu, R. Zobalova, J. Turanek, D. R. Spitz, F. E. Domann, I. E. Scheffler, S. J. Ralph and J. Neuzil (2008). "Alpha-tocopheryl succinate induces apoptosis by targeting ubiquinone-binding sites in mitochondrial respiratory complex II." Oncogene 27(31): 4324-4335.
Elzeinova, F., V. Novakova, D. Buckiova, A. Kubatova and J. Peknicova (2008). "Effect of low dose of vinclozolin on reproductive tract development and sperm parameters in CD1 outbred mice." Reprod Toxicol 26(3-4): 231-238.
Koubek, P., A. Kralova, M. Psenicka and J. Peknicova (2008). "The optimization of the protocol for immunofluorescence on fish spermatozoa." Theriogenology 70(5): 852-858.
Kralova, A., M. Svetlikova, J. Madar, Z. Ulcova-Gallova, A. Bukovsky and J. Peknicova (2008). "Differential transferrin expression in placentae from normal and abnormal pregnancies: a pilot study." Reprod Biol Endocrinol 6: 27.
Pinzani, P., K. Lind, F. Malentacchi, G. Nesi, F. Salvianti, D. Villari, M. Kubista, M. Pazzagli and C. Orlando (2008). "Prostate-specific antigen mRNA and protein levels in laser microdissected cells of human prostate measured by real-time reverse transcriptase-quantitative polymerase chain reaction and immuno-quantitative polymerase chain reaction." Human Pathology 39(10): 1474-1482.
Sinkorova, Z., J. Capkova, J. Niederlova, R. Stepankova and J. Sinkora (2008). "Commensal intestinal bacterial strains trigger ankylosing enthesopathy of the ankle in inbred B10.BR (H-2(k)) male mice." Hum Immunol 69(12): 845-850.
Stahlberg, A., K. Elbing, J. M. Andrade-Garda, B. Sjogreen, A. Forootan and M. Kubista (2008). "Multiway real-time PCR gene expression profiling in yeast Saccharomyces cerevisiae reveals altered transcriptional response of ADH-genes to glucose stimuli." Bmc Genomics 9.
Zobalova, R., M. Stantic, K. Prokopova, L. F. Dong and J. Neuzil (2008). "Cancer cells with high expression of CD133 exert FLIP upregulation and resistance to TRAIL-induced apoptosis." Biofactors 34(3): 231-235.